Construct: ORF ccsbBroadEn_02729

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003173.1_s300c1, BRDN0000394761
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RFTN1 (23180)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23180 RFTN1 raftlin, lipid raft linker 1 NM_015150.2 100% 100%
2 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_005264985.1 100% 100%
3 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_005264986.2 100% 100%
4 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_006713069.1 100% 100%
5 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_011533530.1 100% 100%
6 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_011533529.1 87.7% 86.7% (many diffs)
7 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_017006007.2 73.5% 62.1% 1030_1031ins116;1275_1276ins343
8 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_017006005.1 71.5% 67.9% (many diffs)
9 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_011533531.1 63.5% 51.6% (many diffs)
10 human 23180 RFTN1 raftlin, lipid raft linker 1 XM_017006006.2 61.5% 48.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1803
ORF length:
1734
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGTTGCGGA TTGAACAAGT TAGAGAAACG TGATGAAAAA CGGCCTGGGA
121ATATTTATTC AACTTTGAAG AGGCCTCAGG TGGAAACCAA GATAGATGTG TCCTATGAAT
181ACCGCTTCCT GGAGTTCACG ACTCTGAGTG CTGCGGAGCT CCCTGGGTCC TCAGCAGTGA
241GGCTGGCCTC CCTGCGTGAC CTGCCCGCCC AGCTCCTGGA GCTGTACCAG CAGGGCTTCT
301CGCTGGCGGC CCTGCACCCC TTCGTGCAGC CCACCCATGA GCGGGAGAAG ACGCCCCTGG
361AGCACATCTT TAGAGCCATC CTGATCAAGA AAACCGACAG ATCTCAGAAA ACTGATCTTC
421ACAATGAAGG CTACATCTTG GAATTAGATT GCTGTTCCTC CTTAGACCAC CCGACAGACC
481AGAAACTCAT CCCAGAGTTC ATTAAGAAGA TCCAGGAGGC TGCAAGCCAG GGCCTGAAAT
541TCGTTGGTGT TATACCTCAG TACCATTCCT CTGTGAACTC GGCAGGCAGC AGTGCTCCGG
601TGTCTACTGC CAACAGCACC GAGGATGCCA GAGATGCAAA AAACGCACGT GGGGATCACG
661CGTCACTGGA GAATGAGAAA CCGGGGACTG GGGATGTGTG CAGTGCTCCG GCTGGGAGAA
721ACCAAAGCCC AGAGCCCAGC TCAGGCCCCA GAGGGGAGGT GCCCCTCGCC AAGCAGCCCA
781GCTCACCCTC CGGAGAGGGA GATGGTGGAG AACTTTCACC ACAGGGGGTG AGCAAGACAC
841TGGATGGACC GGAGAGCAAC CCCTTGGAGG TGCATGAAGA GCCACTCTCA GGGAAAATGG
901AGATCTTCAC CCTTTTCAAC AAACCGAAGA GCCATCAGAA GTGCCGGCAA TACTACCCTG
961TCACCATTCC TCTCCATGTC TCCAAGAATG GCCAGACAGT GAGCGGTTTG GACGCCAACT
1021GGTTAGAGCA CATGAGCGAC CACTTCCGGA AAGGAGGCAT GCTGGTGAAC GCAGTCTTCT
1081ACCTTGGAAT AGTGAATGAT TCCTTACATG GCTTGACAGA TGGAGTATTC ATCTTTGAAG
1141CTGTTTCCAC AGAAGATAGC AAAACCATAC AGGGCTATGA TGCTATTGTG GTTGAACAAT
1201GGACAGTCCT GGAAGGTGTC GAAGTGCAGA CAGACTACGT GCCCCTGCTG AACTCGCTGG
1261CGGCCTATGG CTGGCAGCTC ACCTGTGTGC TACCAACTCC CGTCGTCAAG ACTACCAGCG
1321AGGGGAGTGT ATCCACCAAG CAGATTGTCT TTCTTCAGAG ACCTTGTCTA CCTCAGAAAA
1381TCAAGAAGAA GGAATCGAAG TTTCAGTGGC GATTCTCCAG AGAAGAAATG CACAACAGGC
1441AGATGAGGAA ATCAAAAGGT AAACTCAGTG CCAGAGACAA ACAACAAGCA GAAGAAAATG
1501AGAAGAACTT AGAAGACCAG TCTTCCAAAG CTGGAGACAT GGGAAACTGT GTTTCAGGAC
1561AGCAGCAGGA GGGTGGAGTC TCCGAGGAGA TGAAGGGCCC TGTCCAAGAG GACAAGGGAG
1621AACAGCTGTC CCCTGGTGGC CTGCTGTGTG GGGTGGGTGT GGAGGGTGAG GCTGTGCAGA
1681ATGGTCCTGC CAGCCACAGC AGGGCCCTGG TGGGGATTTG CACTGGGCAC TCCAATCCTG
1741GAGAGGATGC CAGGGACGGG GATGCTGAGG AAGTCAGAGA GCTTGGTACG GTTGAAGAAA
1801ACTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1861gcaacgaac

Download FASTA (ORF) (Full)