Construct: ORF ccsbBroadEn_02758

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006077.1_s300c1, BRDN0000389881
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZDHHC17 (23390)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23390 ZDHHC17 zinc finger DHHC-type conta... NM_015336.3 100% 100%
2 human 23390 ZDHHC17 zinc finger DHHC-type conta... NM_001359626.1 98.4% 98.4% 0_1ins30
3 mouse 320150 Zdhhc17 zinc finger, DHHC domain co... NM_172554.2 92.2% 98.5% (many diffs)
4 mouse 320150 Zdhhc17 zinc finger, DHHC domain co... XM_006513761.1 54.5% 58.7% (many diffs)
5 mouse 320150 Zdhhc17 zinc finger, DHHC domain co... XM_006513762.2 52% 56.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1962
ORF length:
1896
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA GCGGGAGGAG GGATTTAACA CCAAGATGGC GGACGGCCCG GATGAGTACG
121ATACCGAAGC GGGCTGTGTG CCCCTTCTCC ACCCAGAGGA AATCAAACCC CAAAGCCATT
181ATAACCATGG ATATGGTGAA CCTCTTGGAC GGAAAACTCA TATTGATGAT TACAGCACAT
241GGGACATAGT CAAGGCTACA CAATATGGAA TATATGAACG CTGTCGAGAA TTGGTGGAAG
301CAGGTTATGA TGTACGGCAA CCGGACAAAG AAAATGTTAC CCTCCTCCAT TGGGCTGCCA
361TCAATAACAG AATAGATTTA GTCAAATACT ATATTTCGAA AGGTGCTATT GTGGATCAAC
421TTGGAGGGGA CCTGAATTCA ACTCCATTGC ACTGGGCCAC AAGACAAGGC CATCTATCCA
481TGGTTGTGCA ACTAATGAAA TATGGTGCAG ATCCTTCATT AATTGATGGA GAAGGATGTA
541GCTGTATTCA TCTGGCTGCT CAGTTCGGAC ATACCTCAAT TGTTGCTTAT CTCATAGCAA
601AAGGACAGGA TGTAGATATG ATGGATCAGA ATGGAATGAC GCCTTTAATG TGGGCAGCAT
661ATAGAACACA TAGTGTGGAT CCAACTAGAT TGCTTTTAAC ATTCAATGTT TCAGTTAACC
721TTGGTGACAA GTATCACAAA AACACTGCTC TGCATTGGGC AGTGCTAGCA GGGAATACCA
781CAGTCATTAG CCTTCTTCTG GAAGCTGGAG CTAATGTTGA TGCCCAGAAT ATCAAGGGCG
841AATCAGCGCT TGATTTGGCA AAACAGAGAA AAAATGTGTG GATGATCAAC CACTTACAAG
901AGGCAAGGCA AGCAAAAGGA TATGACAATC CGTCCTTCCT TAGAAAGCTG AAAGCTGATA
961AGGAATTTCG GCAGAAAGTA ATGTTAGGAA CTCCTTTCCT AGTTATTTGG CTGGTTGGGT
1021TTATAGCAGA CCTAAATATT GATTCTTGGC TCATTAAAGG GCTAATGTAT GGTGGTGTTT
1081GGGCTACAGT ACAGTTTCTT TCAAAATCCT TTTTCGATCA TTCAATGCAT AGTGCATTGC
1141CCCTTGGGAT ATATTTGGCA ACCAAATTCT GGATGTATGT GACGTGGTTC TTCTGGTTTT
1201GGAATGATCT CAACTTTTTA TTTATCCATC TTCCATTCCT TGCCAATAGT GTTGCACTTT
1261TCTACAATTT TGGAAAATCT TGGAAATCAG ATCCAGGGAT TATTAAAGCA ACAGAAGAGC
1321AAAAGAAAAA GACAATAGTT GAACTTGCAG AGACAGGAAG TCTGGACCTC AGTATATTCT
1381GCAGTACCTG TTTGATACGA AAACCGGTGA GGTCCAAACA TTGTGGTGTG TGCAACCGCT
1441GTATAGCAAA ATTTGATCAT CATTGCCCAT GGGTGGGTAA CTGTGTAGGT GCAGGCAACC
1501ATAGATATTT TATGGGCTAC CTATTCTTCT TGCTTTTTAT GATCTGCTGG ATGATTTATG
1561GTTGTATATC TTACTGGGGA CTCCACTGTG AGACCACTTA CACCAAGGAT GGATTTTGGA
1621CATACATTAC TCAGATTGCC ACGTGTTCAC CTTGGATGTT TTGGATGTTC CTGAACAGTG
1681TTTTCCACTT CATGTGGGTG GCTGTATTAC TCATGTGTCA GATGTACCAG ATATCATGTT
1741TAGGTATTAC TACAAATGAA AGAATGAATG CCAGGAGATA CAAGCACTTT AAAGTCACAA
1801CAACGTCTAT TGAAAGCCCA TTCAACCATG GATGTGTAAG AAATATTATA GACTTCTTTG
1861AATTTCGATG CTGTGGCCTC TTTCGTCCTG TTATCGTGGA CTGGACCAGG CAGTATACAA
1921TAGAATATGA CCAAATATCA GGATCTGGGT ACCAGCTGGT GTACCCAACT TTCTTGTACA
1981AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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