Construct: ORF ccsbBroadEn_02763
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014689.1_s300c1, BRDN0000396718
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ITGB3BP (23421)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_014288.4 | 100% | 100% | |
| 2 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001347147.1 | 95.6% | 92% | (many diffs) |
| 3 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001347145.1 | 93.2% | 86.7% | (many diffs) |
| 4 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_017000853.2 | 88.6% | 84.1% | (many diffs) |
| 5 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001206739.1 | 81.6% | 81% | 1_115del;118_119delTAinsGC;121_122delAG |
| 6 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_017000855.2 | 80.1% | 73.6% | (many diffs) |
| 7 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001347148.1 | 77.4% | 77.4% | 0_1ins120 |
| 8 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_024446041.1 | 71.9% | 62.6% | (many diffs) |
| 9 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_017000854.2 | 67.7% | 63.5% | (many diffs) |
| 10 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_024446042.1 | 67.7% | 63.5% | (many diffs) |
| 11 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NR_045147.1 | 49.6% | 1_140del;623_672del;722_1069del | |
| 12 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_017000856.1 | 21.5% | 20.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 597
- ORF length:
- 531
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TGTTAAAAGA TCACTGAAGT TGGATGGTCT GTTAGAAGAA AATTCATTTG 121 ATCCTTCAAA AATCACAAGG AAGAAAAGTG TTATAACTTA TTCTCCAACA ACTGGAACTT 181 GTCAAATGAG TCTATTTGCT TCTCCCACAA GTTCTGAAGA GCAAAAGCAC AGAAATGGAC 241 TATCAAATGA AAAGAGAAAA AAATTGAATC ACCCCAGTTT AACTGAAAGC AAAGAATCTA 301 CAACAAAAGA CAATGATGAA TTCATGATGT TGCTATCAAA AGTTGAGAAA TTGTCAGAAG 361 AAATCATGGA GATAATGCAA AATTTAAGTA GTATACAGGC TTTGGAGGGC AGTAGAGAGC 421 TTGAAAATCT CATTGGAATC TCCTGTGCAT CACATTTCTT AAAAAGAGAA ATGCAGAAAA 481 CCAAAGAACT AATGACAAAA GTGAATAAAC AAAAACTGTT TGAAAAGAGT ACAGGACTTC 541 CTCACAAAGC ATCACGTCAT CTTGACAGCT ATGAATTCCT TAAAGCCATT TTAAACTGCC 601 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 661 aac