Construct: ORF ccsbBroadEn_02782
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008835.1_s300c1, BRDN0000457337
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BICRAL (23506)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23506 | BICRAL | BRD4 interacting chromatin ... | NM_001318819.2 | 100% | 100% | |
| 2 | human | 23506 | BICRAL | BRD4 interacting chromatin ... | NM_015349.2 | 100% | 100% | |
| 3 | human | 23506 | BICRAL | BRD4 interacting chromatin ... | XM_024446389.1 | 100% | 100% | |
| 4 | human | 23506 | BICRAL | BRD4 interacting chromatin ... | XM_024446390.1 | 100% | 100% | |
| 5 | human | 23506 | BICRAL | BRD4 interacting chromatin ... | XR_002956272.1 | 95.2% | 1_55del;1997_1998ins101 | |
| 6 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | NM_001100452.1 | 85.5% | 87.3% | (many diffs) |
| 7 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_006523976.3 | 85.5% | 87.3% | (many diffs) |
| 8 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_006523980.3 | 85.5% | 87.3% | (many diffs) |
| 9 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_006523981.3 | 85.5% | 87.3% | (many diffs) |
| 10 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_017317377.1 | 85.5% | 87.3% | (many diffs) |
| 11 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_006523975.2 | 85.3% | 87% | (many diffs) |
| 12 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_006523974.3 | 83.9% | 85.6% | (many diffs) |
| 13 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_011246346.2 | 81.1% | 82.7% | (many diffs) |
| 14 | mouse | 210982 | Bicral | BRD4 interacting chromatin ... | XM_011246345.2 | 80.6% | 82.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3306
- ORF length:
- 3237
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGATGATGAT GATGACTCGT GTCTCCTTGA TCTTATTGGA GACCCACAAG 121 CATTGAACTA TTTTCTACAT GGACCTAGTA ATAAATCTAG CAATGATGAC TTGACTAATG 181 CAGGATATTC TGCAGCCAAT TCAAATTCAA TTTTCGCCAA CTCTAGTAAT GCTGATCCTA 241 AGTCATCCCT CAAAGGTGTA AGCAACCAGC TTGGAGAAGG GCCCAGTGAT GGACTGCCAC 301 TTTCAAGTAG CCTCCAGTTT CTTGAAGATG AACTCGAGTC TTCTCCTCTT CCTGATCTCA 361 CTGAGGACCA ACCTTTCGAC ATTCTTCAGA AATCCTTGCA AGAGGCCAAT ATCACTGAAC 421 AGACATTGGC AGAAGAGGCA TATTTGGATG CCAGTATAGG TTCAAGCCAA CAGTTTGCAC 481 AAGCTCAGCT TCATCCTTCT TCATCAGCAT CCTTTACTCA GGCTTCTAAT GTTTCTAATT 541 ACTCAGGTCA GACGCTGCAG CCTATAGGGG TGACGCATGT GCCTGTTGGA GCATCGTTTG 601 CAAGCAATAC AGTGGGTGTA CAACATGGCT TTATGCAACA TGTGGGGATC AGTGTTCCCA 661 GCCAGCATTT GTCTAATAGC AGTCAGATTA GTGGTTCTGG TCAAATACAG TTAATTGGGT 721 CATTTGGTAA TCATCCTTCC ATGATGACTA TTAATAACCT AGATGGATCT CAAATCATAT 781 TAAAGGGCAG CGGGCAGCAA GCCCCATCAA ATGTGAGTGG AGGGCTCCTG GTTCATAGAC 841 AGACTCCTAA TGGCAACTCC TTGTTTGGGA ACTCTAGTTC CAGTCCAGTA GCACAGCCTG 901 TTACCGTTCC ATTTAACAGC ACAAATTTTC AAACATCTTT ACCTGTGCAT AACATCATCA 961 TACAAAGGGG TCTTGCACCA AATTCAAATA AAGTCCCAAT TAATATACAG CCAAAGCCTA 1021 TCCAGATGGG TCAGCAAAAT ACATACAATG TGAACAATTT GGGAATTCAG CAGCACCACG 1081 TACAACAAGG GATCTCTTTT GCTTCTGCAA GCTCACCCCA GGGCTCAGTA GTTGGTCCAC 1141 ACATGTCTGT GAACATTGTA AACCAACAGA ACACAAGAAA GCCAGTCACC TCACAGGCAG 1201 TGAGCAGCAC TGGGGGCAGT ATTGTTATTC ATTCCCCCAT GGGCCAACCT CACGCACCCC 1261 AAAGTCAGTT CCTTATACCT ACAAGCCTTT CTGTCAGTTC CAACTCGGTA CACCACGTCC 1321 AGACTATAAA TGGGCAACTT CTTCAAACTC AACCCTCTCA GCTCATTTCT GGCCAAGTGG 1381 CCTCAGAGCA TGTCATGTTG AACAGAAACT CTTCCAACAT GCTCAGGACC AACCAACCAT 1441 ATACTGGACC GATGCTTAAC AACCAGAATA CTGCTGTCCA CTTAGTGTCT GGGCAGACAT 1501 TTGCTGCCTC TGGAAGTCCA GTGATAGCCA ATCATGCCTC TCCTCAGCTT GTGGGTGGAC 1561 AGATGCCCTT GCAGCAGGCA TCCCCAACTG TATTACACCT GTCACCTGGG CAGAGCAGCG 1621 TTTCCCAAGG AAGACCTGGC TTCGCCACCA TGCCATCGGT GACAAGCATG TCAGGACCTA 1681 GTCGGTTCCC TGCTGTCAGC TCAGCCAGCA CTGCCCATCC TAGTCTTGGG TCTGCAGTTC 1741 AGTCTGGTTC ATCAGGATCA AACTTTACAG GAGATCAGCT GACCCAGCCA AACAGGACTC 1801 CAGTACCAGT CAGTGTGTCT CATCGTCTTC CAGTTTCTTC TTCCAAGTCT ACCAGCACCT 1861 TCAGTAACAC ACCTGGAACA GGAACCCAGC AACAATTCTT CTGCCAGGCT CAGAAAAAAT 1921 GTCTGAATCA GACTTCCCCC ATTTCTGCTC CCAAGACCAC AGACGGCCTG AGGCAAGCAC 1981 AGATCCCTGG GCTCTTGAGC ACCACACTGC CAGGGCAGGA TTCTGGAAGC AAAGTTATAT 2041 CCGCATCCTT AGGAACCGCA CAACCACAGC AGGAAAAAGT AGTTGGATCA TCTCCTGGCC 2101 ATCCAGCTGT GCAGGTGGAG AGTCATTCGG GAGGACAAAA AAGGCCTGCT GCGAAACAGC 2161 TAACGAAAGG AGCTTTCATT CTCCAGCAGT TGCAGAGGGA CCAAGCCCAC ACTGTGACAC 2221 CAGACAAAAG TCACTTCCGA TCACTAAGTG ATGCGGTACA GAGACTGCTC TCCTACCACG 2281 TGTGCCAGGG CTCCATGCCC ACTGAAGAAG ACTTGAGAAA AGTGGACAAT GAATTTGAGA 2341 CAGTTGCCAC TCAGCTCCTA AAAAGGACCC AAGCTATGCT TAACAAATAC AGATGCCTGC 2401 TCCTAGAAGA TGCCATGCGA ATCAATCCCT CTGCTGAGAT GGTGATGATC GATAGGATGT 2461 TCAACCAGGA GGAAAGAGCT TCCCTGTCCC GAGACAAGCG TTTGGCACTT GTAGACCCTG 2521 AGGGTTTTCA GGCTGATTTC TGTTGTTCCT TCAAACTTGA TAAAGCTGCT CATGAGACAC 2581 AGTTTGGCCG GAGTGACCAG CATGGCAGTA AAGCAAGCAG CTCTCTGCAA CCGCCAGCCA 2641 AGGCCCAAGG CAGAGACCGA GCCAAAACCG GTGTGACGGA ACCCATGAAT CATGACCAGT 2701 TTCATCTAGT GCCTAATCAC ATCGTGGTCT CTGCAGAAGG AAACATTTCT AAAAAAACAG 2761 AATGCCTTGG CAGAGCACTG AAATTTGACA AAGTGGGCTT AGTGCAGTAC CAGAGCACGT 2821 CTGAAGAGAA GGCCAGCCGG AGAGAGCCTC TGAAGGCCAG TCAGTGCTCT CCCGGCCCTG 2881 AGGGGCACCG GAAAACCTCA TCCAGATCGG ATCATGGTAC TGAGAGCAAA CTGTCAAGCA 2941 TCCTAGCAGA TTCGCACTTG GAGATGACGT GTAACAATTC CTTCCAGGAC AAAAGTCTGA 3001 GGAATTCTCC AAAGAATGAA GTTTTACACA CAGACATCAT GAAAGGGTCA GGCGAACCCC 3061 AGCCAGATCT CCAGCTGACA AAGAGCTTGG AAACCACATT TAAGAACATC TTGGAACTCA 3121 AAAAGGCGGG ACGGCAGCCC CAGAGTGACC CCACGGTTAG CGGCTCTGTT GAGTTAGATT 3181 TCCCCAACTT TTCTCCTATG GCTTCACAGG AAAACTGCCT GGAAAAGTTC ATCCCGGACC 3241 ACAGTGAAGG TGTTGTAGAA ACTGACTCCA TTTTAGAAGC AGCTGTAAAT AGTATCCTAG 3301 AGTGTTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt 3361 gttgcaacga ac