Construct: ORF ccsbBroadEn_02824
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005118.1_s300c1, BRDN0000391161
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SSBP3 (23648)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23648 | SSBP3 | single stranded DNA binding... | NM_018070.5 | 100% | 100% | |
| 2 | human | 23648 | SSBP3 | single stranded DNA binding... | NM_001009955.4 | 95.9% | 94.5% | (many diffs) |
| 3 | human | 23648 | SSBP3 | single stranded DNA binding... | NM_145716.4 | 94.8% | 94.8% | 445_504del |
| 4 | human | 23648 | SSBP3 | single stranded DNA binding... | XM_006710545.4 | 92.6% | 92.6% | 362_363ins81 |
| 5 | human | 23648 | SSBP3 | single stranded DNA binding... | XM_017000897.2 | 66.4% | 66.4% | 0_1ins330;115_174del |
| 6 | human | 23648 | SSBP3 | single stranded DNA binding... | XM_017000898.2 | 66.4% | 66.4% | 0_1ins330;115_174del |
| 7 | human | 23648 | SSBP3 | single stranded DNA binding... | XM_017000899.2 | 66.1% | 64.6% | (many diffs) |
| 8 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | NM_198438.1 | 91.1% | 94.5% | (many diffs) |
| 9 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | NM_023672.2 | 90.2% | 94.8% | (many diffs) |
| 10 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503416.2 | 89.2% | 92.5% | (many diffs) |
| 11 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503413.2 | 88.4% | 92.9% | (many diffs) |
| 12 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503415.2 | 87.8% | 91% | (many diffs) |
| 13 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503412.2 | 87.1% | 91.5% | (many diffs) |
| 14 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503414.2 | 86% | 89.2% | (many diffs) |
| 15 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503411.2 | 85.4% | 89.7% | (many diffs) |
| 16 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503419.2 | 62.8% | 66.4% | (many diffs) |
| 17 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503417.3 | 59.4% | 62.9% | (many diffs) |
| 18 | mouse | 72475 | Ssbp3 | single-stranded DNA binding... | XM_006503420.2 | 58.8% | 61% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1170
- ORF length:
- 1104
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggCATGTT TGCCAAAGGC AAAGGCTCGG CGGTGCCCTC GGATGGGCAG GCTCGGGAAA 121 AGTTAGCTTT ATACGTCTAC GAATATTTAC TGCACGTAGG AGCACAGAAA TCTGCACAGA 181 CCTTCTTATC GGAGATTCGA TGGGAAAAAA ACATCACGTT GGGAGAACCG CCTGGGTTTT 241 TGCACTCGTG GTGGTGTGTA TTTTGGGACC TTTACTGTGC AGCTCCTGAA AGGAGAGACA 301 CTTGTGAACA TTCAAGTGAA GCAAAAGCCT TTCATGATTA TAGTGCAGCA GCTGCCCCGA 361 GCCCCGTGCT TGGCAACATT CCCCCCAACG ATGGGATGCC GGGAGGCCCC ATCCCGCCAG 421 GTTTCTTTCA GGGTCCTCCG GGGTCACAGC CCTCGCCGCA CGCACAGCCT CCACCTCACA 481 ATCCTAGCAG CATGATGGGA CCCCACAGTC AGCCTCCGGG AGGAGTTCCT GGGACACAGC 541 CATTGCTGCC CAATTCTATG GATCCCACAC GACAACAAGG CCACCCCAAC ATGGGAGGAT 601 CAATGCAGAG AATGAACCCT CCCCGAGGCA TGGGGCCCAT GGGTCCCGGC CCACAGAATT 661 ACGGCAGCGG CATGAGACCA CCACCCAACT CCCTCGGCCC CGCCATGCCC GGGATTAACA 721 TGGGCCCGGG AGCTGGCAGA CCCTGGCCCA ATCCTAACAG TGCTAACTCA ATTCCATACT 781 CCTCCTCATC ACCTGGTACC TATGTGGGAC CCCCTGGTGG TGGCGGTCCT CCAGGAACAC 841 CCATTATGCC CAGTCCCGCA GATTCAACAA ATTCCAGTGA CAACATCTAC ACAATGATTA 901 ATCCAGTGCC GCCTGGAGGC AGCCGGTCCA ACTTCCCGAT GGGTCCCGGC TCGGACGGTC 961 CGATGGGCGG CATGGGTGGC ATGGAGCCAC ACCACATGAA TGGATCATTA GGGTCAGGCG 1021 ACATAGACGG ACTTCCAAAA AATTCTCCTA ACAACATAAG TGGCATTAGC AATCCTCCAG 1081 GCACCCCTCG AGATGACGGC GAGCTAGGAG GGAACTTCCT CCACTCCTTT CAGAACGACA 1141 ATTATTCTCC AAGCATGACG ATGAGTGTGT GAccaacttt cttgtacaaa gttggcatta 1201 taagaaagca ttgcttatca atttgttgca acgaac