Construct: ORF ccsbBroadEn_02907
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001186.1_s300c1, BRDN0000390306
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SETBP1 (26040)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26040 | SETBP1 | SET binding protein 1 | NM_001130110.2 | 100% | 100% | |
| 2 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451158.1 | 15.5% | 13.4% | (many diffs) |
| 3 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451156.1 | 14.1% | 12.2% | (many diffs) |
| 4 | human | 26040 | SETBP1 | SET binding protein 1 | NM_015559.3 | 13.8% | 12% | (many diffs) |
| 5 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451153.1 | 13.8% | 12% | (many diffs) |
| 6 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451154.1 | 13.8% | 12% | (many diffs) |
| 7 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451155.1 | 13.8% | 12% | (many diffs) |
| 8 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451149.1 | 13.6% | 11.8% | (many diffs) |
| 9 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451150.1 | 13.6% | 11.8% | (many diffs) |
| 10 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451151.1 | 13.6% | 11.8% | (many diffs) |
| 11 | human | 26040 | SETBP1 | SET binding protein 1 | XM_024451152.1 | 13.6% | 11.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 792
- ORF length:
- 726
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaCTTTTG TACAAAAAAG 61 TTGGCATGGA GTCCAGGGAA ACCTTAAGCA GCTCCCGGCA AAGAGGGGGC GAGTCAGACT 121 TCCTGCCGGT CTCCTCAGCC AAGCCCCCAG CTGCTCCTGG CTGTGCAGGA GAACCTTTGC 181 TCTCCACTCC AGGACCTGGG AAGGGGATCC CGGTGGGCGG AGAGCGCATG GAGCCAGAGG 241 AGGAGGATGA ACTAGGCTCA GGGCGGGATG TGGATTCCAA CTCCAACGCG GACAGTGAGA 301 AATGGGTGGC AGGAGATGGT TTGGAAGAGC AGGAATTTTC TATCAAGGAG GCAAACTTCA 361 CAGAGGGAAG TCTGAAGCTA AAGATTCAGA CCACAAAGCG GGCTAAGAAA CCCCCAAAGA 421 ATTTGGAGAA CTATATATGT CCACCTGAGA TCAAGATCAC CATCAAGCAG TCTGGGGACC 481 AGAAGGTGTC CCGTGCTGGA AAAAATAGCA AAGCCACGAA GGAGGAAGAA AGAAGCCACT 541 CCAAAAAGAA GCTCCTCACA GCCAGTGACC TTGCAGCCAG TGACCTCAAA GGATTTCAGC 601 CACAGATTAA AGACTCCAGT AAGGAGGAAG TCTGGAAGAG AAGAGGAGGC CAAGGCATCC 661 CATTCAAAAA GCAATTCCTG TCCCAGGAAC GTGCCATGTG CTTCTCATGC CCCCGGAACC 721 CATTCCCCGC AAAACCCGGT TCTCTCACTC TTCCTTTTCA CAGTGAACCT GCAGTCTGGG 781 CACAAGAAGT ATACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 841 caatttgttg caacgaac