Construct: ORF ccsbBroadEn_02924
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008196.1_s300c1, BRDN0000394793
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PHF19 (26147)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26147 | PHF19 | PHD finger protein 19 | NM_015651.3 | 100% | 100% | |
| 2 | human | 26147 | PHF19 | PHD finger protein 19 | XM_005251906.3 | 100% | 100% | |
| 3 | human | 26147 | PHF19 | PHD finger protein 19 | XM_011518509.3 | 100% | 100% | |
| 4 | human | 26147 | PHF19 | PHD finger protein 19 | XM_017014612.2 | 100% | 100% | |
| 5 | human | 26147 | PHF19 | PHD finger protein 19 | NM_001286840.1 | 96.8% | 96.8% | 1_57del |
| 6 | human | 26147 | PHF19 | PHD finger protein 19 | XM_011518511.2 | 75.7% | 73.2% | 1_57del;1359_1360ins29;1419_1420ins349 |
| 7 | human | 26147 | PHF19 | PHD finger protein 19 | XM_024447504.1 | 75.1% | 73.4% | 0_1ins331;31_32ins101 |
| 8 | human | 26147 | PHF19 | PHD finger protein 19 | XM_024447505.1 | 75.1% | 73.4% | 0_1ins331;31_32ins101 |
| 9 | human | 26147 | PHF19 | PHD finger protein 19 | XM_024447506.1 | 75.1% | 73.4% | 0_1ins331;31_32ins101 |
| 10 | human | 26147 | PHF19 | PHD finger protein 19 | XM_017014613.1 | 70.7% | 63% | 1_57del;1162_1163ins25;1329_1330ins443 |
| 11 | human | 26147 | PHF19 | PHD finger protein 19 | XM_024447507.1 | 70.1% | 70.1% | 0_1ins519 |
| 12 | human | 26147 | PHF19 | PHD finger protein 19 | XM_011518515.2 | 67.2% | 61.9% | 1_57del;1187_1188ins88;1266_1267ins443 |
| 13 | human | 26147 | PHF19 | PHD finger protein 19 | NM_001286842.1 | 63.9% | 63.9% | 0_1ins627 |
| 14 | human | 26147 | PHF19 | PHD finger protein 19 | XM_011518516.2 | 61.6% | 61.4% | 1_57del;1162_1163insGTA;1164_1165ins630 |
| 15 | human | 26147 | PHF19 | PHD finger protein 19 | XR_929758.3 | 37.1% | 1_588del;1693_1694ins25;2304_4597del | |
| 16 | human | 26147 | PHF19 | PHD finger protein 19 | NM_001009936.3 | 33% | 28.1% | (many diffs) |
| 17 | human | 26147 | PHF19 | PHD finger protein 19 | NR_104601.1 | 27.2% | (many diffs) | |
| 18 | human | 26147 | PHF19 | PHD finger protein 19 | NM_001286843.2 | 22.4% | 21.2% | 363_364insGGTTACCACCAGCA;390_391ins1336 |
| 19 | mouse | 74016 | Phf19 | PHD finger protein 19 | NM_028716.4 | 87.2% | 88.7% | (many diffs) |
| 20 | mouse | 74016 | Phf19 | PHD finger protein 19 | XM_006498379.2 | 87.2% | 88.7% | (many diffs) |
| 21 | mouse | 74016 | Phf19 | PHD finger protein 19 | XM_006498380.1 | 64.9% | 66.3% | (many diffs) |
| 22 | mouse | 74016 | Phf19 | PHD finger protein 19 | XM_006498381.1 | 62.1% | 63.4% | (many diffs) |
| 23 | mouse | 74016 | Phf19 | PHD finger protein 19 | XM_006498382.3 | 59.9% | 59.1% | (many diffs) |
| 24 | mouse | 74016 | Phf19 | PHD finger protein 19 | XM_006498383.3 | 58.2% | 57.4% | (many diffs) |
| 25 | mouse | 74016 | Phf19 | PHD finger protein 19 | XM_006498384.3 | 23% | 22.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1809
- ORF length:
- 1740
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGAATCGA GCTCTGGATC CAGGGACTCG GGACTCCTAT GGTGCCACCA 121 GCCACCTCCC CAACAAGGGG GCCCTGGCGA AGGTCAAGAA CAACTTCAAA GACTTGATGT 181 CCAAACTGAC GGAGGGCCAG TATGTGCTGT GCCGGTGGAC AGATGGCCTG TACTACCTCG 241 GGAAGATCAA GAGGGTCAGC AGCTCTAAGC AAAGCTGCCT CGTGACTTTC GAAGATAATT 301 CCAAATACTG GGTCCTATGG AAGGACATAC AGCATGCCGG TGTTCCAGGA GAGGAGCCCA 361 AGTGCAACAT CTGCCTAGGG AAGACATCAG GGCCGCTGAA TGAGATCCTC ATCTGCGGGA 421 AGTGTGGCCT GGGTTACCAC CAGCAGTGCC ACATCCCCAT AGCGGGCAGT GCTGACCAGC 481 CCCTGCTCAC ACCTTGGTTC TGCCGACGCT GCATCTTCGC ACTGGCTGTG CGGAAAGGCG 541 GCGCGCTGAA GAAGGGCGCC ATCGCCAGGA CGCTGCAGGC CGTGAAGATG GTGCTGTCCT 601 ACCAGCCCGA GGAGCTCGAG TGGGACTCGC CCCATCGCAC CAACCAGCAG CAATGCTACT 661 GCTACTGCGG CGGGCCCGGA GAATGGTACC TGCGGATGCT GCAATGTTAC CGGTGCAGGC 721 AGTGGTTCCA CGAGGCCTGC ACCCAGTGCC TCAATGAGCC CATGATGTTT GGAGACCGGT 781 TTTACCTGTT CTTCTGCTCC GTGTGTAACC AGGGCCCAGA GTACATCGAG AGGCTGCCCC 841 TGCGATGGGT GGATGTGGTT CACCTGGCCC TCTATAATCT GGGGGTACAG AGCAAGAAGA 901 AGTACTTTGA CTTTGAGGAG ATTCTGGCCT TTGTCAACCA CCACTGGGAG CTCCTGCAGC 961 TTGGCAAGCT CACCAGCACC CCAGTGACAG ATCGAGGACC ACATCTCCTC AACGCTCTGA 1021 ACAGTTATAA AAGCCGGTTC CTCTGCGGCA AGGAGATCAA GAAGAAGAAG TGCATCTTCC 1081 GCCTGCGCAT CCGCGTCCCA CCCAACCCGC CAGGGAAGCT GCTGCCTGAC AAAGGACTGC 1141 TGCCAAATGA GAACAGCGCC TCCTCTGAGC TGCGTAAGAG AGGAAAGAGC AAGCCTGGTT 1201 TGTTGCCTCA CGAATTCCAG CAGCAGAAAA GGCGAGTTTA TAGAAGAAAA AGATCAAAGT 1261 TTTTGCTGGA AGATGCTATT CCCAGTAGTG ACTTCACCTC AGCCTGGAGC ACCAACCACC 1321 ACCTGGCTAG CATATTTGAC TTCACGCTGG ATGAAATTCA AAGTTTAAAA AGTGCCAGCT 1381 CAGGCCAGAC CTTCTTCTCA GATGTCGACT CCACCGACGC TGCCAGCACC TCTGGCTCTG 1441 CCTCCACCAG CCTCTCCTAT GACTCCAGAT GGACAGTGGG CAGCCGAAAG AGGAAGCTGG 1501 CAGCCAAGGC ATACATGCCC CTGCGGGCAA AGCGGTGGGC AGCTGAGCTG GATGGACGCT 1561 GCCCCTCGGA CAGCAGTGCA GAGGGGGCTT CAGTCCCCGA GCGGCCAGAC GAAGGCATTG 1621 ACAGCCACAC ATTTGAGAGC ATCAGTGAAG ATGACTCATC CCTGTCCCAC CTCAAGTCAT 1681 CTATCACCAA CTACTTTGGT GCAGCTGGGC GGTTGGCCTG TGGGGAGAAG TACCAGGTGT 1741 TGGCTCGGAG GGTCACACCT GAGGGCAAGG TTCAGTACCT GGTGGAGTGG GAAGGGACCA 1801 CCCCTTACTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1861 tttgttgcaa cgaac