Construct: ORF ccsbBroadEn_02930

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011556.1_s300c1, BRDN0000395604
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PITPNC1 (26207)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26207 PITPNC1 phosphatidylinositol transf... NM_181671.3 100% 100%
2 human 26207 PITPNC1 phosphatidylinositol transf... XM_017024443.1 94.5% 94.7% (many diffs)
3 human 26207 PITPNC1 phosphatidylinositol transf... XM_017024444.1 91.4% 91.4% 0_1ins69
4 human 26207 PITPNC1 phosphatidylinositol transf... XM_017024445.1 91.4% 91.4% 0_1ins69
5 human 26207 PITPNC1 phosphatidylinositol transf... NM_012417.4 77.5% 72.7% (many diffs)
6 human 26207 PITPNC1 phosphatidylinositol transf... XM_017024442.1 73.2% 68.5% (many diffs)
7 human 26207 PITPNC1 phosphatidylinositol transf... XM_005257216.2 70.6% 65.8% (many diffs)
8 mouse 71795 Pitpnc1 phosphatidylinositol transf... NM_145823.2 90.2% 98.1% (many diffs)
9 mouse 71795 Pitpnc1 phosphatidylinositol transf... XM_006534264.3 82.4% 89.5% (many diffs)
10 mouse 71795 Pitpnc1 phosphatidylinositol transf... XM_006534262.3 69.9% 71.8% (many diffs)
11 mouse 71795 Pitpnc1 phosphatidylinositol transf... XM_006534263.3 63.6% 64.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
870
ORF length:
804
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TAAAAAAAAG
61TTGGTATGCT GCTGAAAGAG TACCGGATCT GCATGCCGCT CACCGTAGAC GAGTACAAAA
121TTGGACAGCT GTACATGATC AGCAAACACA GCCATGAACA GAGTGACCGG GGAGAAGGGG
181TGGAGGTCGT CCAGAATGAG CCCTTTGAGG ACCCTCACCA TGGCAATGGG CAGTTCACCG
241AGAAGCGGGT GTATCTCAAC AGCAAACTGC CTAGTTGGGC TAGAGCTGTT GTCCCCAAAA
301TATTTTATGT GACAGAGAAG GCTTGGAACT ATTATCCCTA CACAATTACA GAATACACAT
361GTTCCTTTCT GCCGAAATTC TCCATTCATA TAGAAACCAA GTATGAGGAC AACAAAGGAA
421GCAATGACAC CATTTTCGAC AATGAAGCCA AAGACGTGGA GAGAGAAGTT TGCTTTATTG
481ATATTGCCTG CGATGAAATT CCAGAGCGCT ACTACAAAGA ATCTGAGGAT CCTAAGCACT
541TCAAGTCAGA GAAGACAGGA CGGGGACAGT TGAGGGAAGG CTGGAGAGAT AGTCATCAGC
601CTATCATGTG CTCCTACAAG CTGGTGACTG TGAAGTTTGA GGTCTGGGGG CTTCAGACCA
661GAGTGGAACA ATTTGTACAC AAGGTGGTCC GAGACATTCT GCTGATTGGA CATAGACAGG
721CTTTTGCATG GGTTGATGAG TGGTATGATA TGACAATGGA TGATGTTCGG GAATACGAGA
781AAAACATGCA TGAACAAACC AACATAAAAG TTTGCAATCA GCATTCCTCC CCTGTGGATG
841ACATAGAGAG TCATGCCCAA ACAAGTACAT GCCCAACTTT CTTGTACAAA GTtggcatta
901taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)