Construct: ORF ccsbBroadEn_02947

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002571.1_s300c1, BRDN0000386915
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXO4 (26272)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26272 FBXO4 F-box protein 4 NM_012176.3 100% 100%
2 human 26272 FBXO4 F-box protein 4 XM_011514026.3 83% 76.3% (many diffs)
3 human 26272 FBXO4 F-box protein 4 NM_033484.2 78.9% 77.5% (many diffs)
4 human 26272 FBXO4 F-box protein 4 NM_001297437.1 78.4% 77.2% (many diffs)
5 human 26272 FBXO4 F-box protein 4 XM_011514027.2 64.6% 62.7% (many diffs)
6 human 26272 FBXO4 F-box protein 4 XM_006714470.4 62.7% 62.7% 0_1ins432
7 mouse 106052 Fbxo4 F-box protein 4 NM_134099.2 85% 88.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1227
ORF length:
1161
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGGAAGCGAG CCGCGCAGCG GAACAAACTC GCCGCCGCCG CCCTTCAGCG
121ACTGGGGCCG CCTGGAGGCG GCCATCCTCA GCGGCTGGAA GACCTTCTGG CAGTCAGTGA
181GCAAGGAGAG GGTGGCGCGT ACGACCTCAC GGGAGGAGGT GGATGAGGCG GCCAGCACCC
241TGACGCGGCT GCCGATTGAT GTACAGCTAT ATATTTTGTC CTTTCTTTCA CCTCATGATC
301TGTGTCAGTT GGGAAGTACA AATCATTATT GGAATGAAAC TGTAAGAGAT CCAATTCTGT
361GGAGATACTT TTTGTTGAGG GATCTTCCTT CTTGGTCTTC TGTTGACTGG AAGTCTCTTC
421CAGATCTAGA AATCTTAAAA AAGCCTATAT CTGAGGTCAC TGATGGTGCA TTTTTTGACT
481ACATGGCAGT CTATAGAATG TGCTGTCCAT ACACAAGAAG AGCTTCAAAA TCCAGCCGTC
541CTATGTATGG AGCTGTCACT TCTTTTTTAC ACTCCCTGAT CATTCAGAAT GAACCACGAT
601TTGCTATGTT TGGACCAGGT TTGGAAGAAT TGAATACCTC TTTGGTGTTG AGCTTGATGT
661CTTCAGAGGA ACTTTGCCCA ACAGCTGGTT TGCCTCAGAG GCAGATTGAT GGTATTGGAT
721CAGGAGTCAA TTTTCAGTTG AACAACCAAC ATAAATTCAA CATTCTAATC TTATATTCAA
781CTACCAGAAA GGAAAGAGAT AGAGCAAGGG AAGAGCATAC AAGTGCAGTT AACAAGATGT
841TCAGTCGACA CAATGAAGGT GATGATCAAC AAGGAAGCCG GTACAGTGTG ATTCCACAGA
901TTCAAAAAGT GTGTGAAGTT GTAGATGGGT TCATCTATGT TGCAAATGCT GAAGCTCATA
961AAAGACATGA ATGGCAAGAT GAATTTTCTC ATATTATGGC AATGACAGAT CCAGCCTTTG
1021GGTCTTCGGG AAGACCATTG TTGGTTTTAT CTTGTATTTC TCAAGGGGAT GTAAAAAGAA
1081TGCCCTGTTT TTATTTGGCT CATGAGCTGC ATCTGAATCT TCTAAATCAC CCATGGCTGG
1141TCCAGGATAC AGAGGCTGAA ACTCTGACTG GTTTTTTGAA TGGCATTGAG TGGATTCTTG
1201AAGAAGTGGA ATCTAAGCGT GCAAGATGCC CAACTTTCTT GTACAAAGTt ggcattataa
1261gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)