Construct: ORF ccsbBroadEn_03013
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007684.1_s300c1, BRDN0000392872
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ERLEC1 (27248)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27248 | ERLEC1 | endoplasmic reticulum lectin 1 | NM_015701.5 | 100% | 100% | |
| 2 | human | 27248 | ERLEC1 | endoplasmic reticulum lectin 1 | XM_011532766.1 | 95.4% | 93.3% | (many diffs) |
| 3 | human | 27248 | ERLEC1 | endoplasmic reticulum lectin 1 | NM_001127397.2 | 94.6% | 94.6% | 1226_1227ins78 |
| 4 | human | 27248 | ERLEC1 | endoplasmic reticulum lectin 1 | XM_024452792.1 | 90.8% | 89.3% | (many diffs) |
| 5 | human | 27248 | ERLEC1 | endoplasmic reticulum lectin 1 | NM_001127398.2 | 88.8% | 88.8% | 878_879ins162 |
| 6 | human | 27248 | ERLEC1 | endoplasmic reticulum lectin 1 | XM_024452793.1 | 80.5% | 79% | (many diffs) |
| 7 | mouse | 66753 | Erlec1 | endoplasmic reticulum lectin 1 | NM_025745.3 | 91% | 96.4% | (many diffs) |
| 8 | mouse | 66753 | Erlec1 | endoplasmic reticulum lectin 1 | XM_006514781.2 | 87.9% | 92.3% | (many diffs) |
| 9 | mouse | 66753 | Erlec1 | endoplasmic reticulum lectin 1 | XM_011243744.1 | 87.9% | 92.3% | (many diffs) |
| 10 | mouse | 66753 | Erlec1 | endoplasmic reticulum lectin 1 | XM_006514782.3 | 87.3% | 91.7% | (many diffs) |
| 11 | mouse | 66753 | Erlec1 | endoplasmic reticulum lectin 1 | XM_011243743.2 | 85.6% | 86.9% | (many diffs) |
| 12 | mouse | 66753 | Erlec1 | endoplasmic reticulum lectin 1 | XM_006514784.2 | 80% | 79.8% | (many diffs) |
| 13 | mouse | 66753 | Erlec1 | endoplasmic reticulum lectin 1 | XM_011243745.2 | 52.8% | 52.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1515
- ORF length:
- 1449
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGAAGGAGGC GGCGGCGTAC GGAGTCTGGT CCCGGGCGGG CCGGTGTTAC 121 TGGTCCTCTG CGGCCTCCTG GAGGCGTCCG GCGGCGGCCG AGCCCTTCCT CAACTCAGCG 181 ATGACATCCC TTTCCGAGTC AACTGGCCCG GCACCGAGTT CTCTCTGCCC ACAACTGGAG 241 TTTTATATAA AGAAGATAAT TATGTCATCA TGACAACTGC ACATAAAGAA AAATATAAAT 301 GCATACTTCC CCTTGTGACA AGTGGGGATG AGGAAGAAGA AAAGGATTAT AAAGGCCCTA 361 ATCCAAGAGA GCTTTTGGAG CCACTATTTA AACAAAGCAG TTGTTCCTAC AGAATTGAGT 421 CTTATTGGAC TTACGAAGTA TGTCATGGAA AACACATTCG GCAGTACCAT GAAGAGAAAG 481 AAACTGGTCA GAAAATAAAT ATTCACGAGT ACTACCTTGG GAATATGTTG GCCAAGAACC 541 TTCTATTTGA AAAAGAACGA GAAGCAGAAG AAAAGGAAAA ATCAAATGAG ATTCCCACTA 601 AAAATATCGA AGGTCAGATG ACACCATACT ATCCTGTGGG AATGGGAAAT GGTACACCTT 661 GTAGTTTGAA ACAGAACCGG CCCAGATCAA GTACTGTGAT GTACATATGT CATCCTGAAT 721 CTAAGCATGA AATTCTTTCA GTAGCTGAAG TTACAACTTG TGAATATGAA GTTGTCATTT 781 TGACACCACT CTTGTGCAGT CATCCTAAAT ATAGGTTCAG AGCATCTCCT GTGAATGACA 841 TATTTTGTCA ATCACTGCCA GGATCTCCAT TTAAGCCCCT CACCCTGAGG CAGCTGGAGC 901 AGCAGGAAGA AATACTAAGG GTGCCTTTTA GGAGAAATAA AGAGGAAGAT TTGCAATCAA 961 CTAAAGAAGA GAGATTTCCA GCGATCCACA AGTCGATTGC TATTGGCTCT CAGCCAGTGC 1021 TCACTGTTGG GACAACCCAC ATATCCAAAT TGACAGATGA CCAACTCATA AAAGAGTTTC 1081 TTAGTGGTTC TTACTGCTTT CGTGGGGGTG TCGGTTGGTG GAAATATGAA TTCTGCTATG 1141 GCAAACATGT ACATCAATAC CATGAGGACA AGGATAGTGG GAAAACCTCT GTGGTTGTCG 1201 GGACATGGAA CCAAGAAGAG CATATTGAAT GGGCTAAGAA GAATACTGCT AGAGCTTATC 1261 ATCTTCAAGA CGATGGTACC CAGACAGTCA GGATGGTGTC ACATTTTTAT GGAAATGGAG 1321 ATATTTGTGA TATAACTGAC AAACCAAGAC AGGTGACTGT AAAACTAAAG TGCAAAGAAT 1381 CAGATTCACC TCATGCTGTT ACTGTATATA TGCTAGAGCC TCACTCCTGT CAATATATTC 1441 TTGGGGTTGA ATCTCCAGTG ATCTGTAAAA TCTTAGATAC AGCAGATGAA AATGGACTTC 1501 TTTCTCTCCC CAACTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1561 tatcaatttg ttgcaacgaa c