Construct: ORF ccsbBroadEn_03043
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004960.1_s300c1, BRDN0000396924
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DEXI (28955)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 28955 | DEXI | Dexi homolog | NM_014015.4 | 100% | 100% | |
| 2 | human | 100289656 | LOC100289656 | Dexi homolog (mouse) pseudo... | NR_036475.2 | 19.4% | 1_701del;879_880delTTinsCC;895_896ins91 | |
| 3 | mouse | 58239 | Dexi | dexamethasone-induced trans... | NM_021428.4 | 90.8% | 94.7% | (many diffs) |
| 4 | mouse | 58239 | Dexi | dexamethasone-induced trans... | XM_011245991.1 | 90.8% | 94.7% | (many diffs) |
| 5 | mouse | 58239 | Dexi | dexamethasone-induced trans... | XM_017317106.1 | 90.8% | 94.7% | (many diffs) |
| 6 | mouse | 58239 | Dexi | dexamethasone-induced trans... | XM_017317107.1 | 90.8% | 94.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 351
- ORF length:
- 285
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT CGGCGCCCGG GTCGCGGCCC ACCTGGACGC ACTGGGCCCC CTGGTCCCCT 121 ACGTGCCGCC GCCGCTGCTG CCCTCTATGT TCTACGTGGG CCTGTTCTTC GTCAATGTGC 181 TGATCCTGTA CTACGCCTTC CTCATGGAGT ACATCGTCCT CAACGTGGGC CTCGTCTTCC 241 TGCCCGAGGA CATGGACCAG GCGCTCGTGG ACCTCGGCGT GCTCTCCGAC CCCGGCTCGG 301 GCCTTTACGA TGCTGACTCG GAGCTCGACG TCTTTGATGC GTACTTGGAG TACCCAACTT 361 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac