Construct: ORF ccsbBroadEn_03090

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000470.1_s300c1, BRDN0000396485
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMOD3 (29766)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29766 TMOD3 tropomodulin 3 NM_014547.5 100% 100%
2 human 29766 TMOD3 tropomodulin 3 XM_017022087.1 100% 100%
3 human 29766 TMOD3 tropomodulin 3 XM_017022088.1 100% 100%
4 mouse 50875 Tmod3 tropomodulin 3 NM_016963.2 86.6% 90% (many diffs)
5 mouse 50875 Tmod3 tropomodulin 3 XM_017313458.1 52.9% 53.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1122
ORF length:
1056
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC ACTGCCATTC CGTAAGGACT TAGAAAAGTA CAAAGACCTT GATGAAGATG
121AGCTCCTTGG GAATCTGTCA GAAACAGAAC TGAAACAACT GGAAACTGTT TTGGATGATC
181TTGACCCCGA GAATGCCCTT CTGCCTGCAG GGTTCCGGCA GAAGAACCAG ACATCAAAGT
241CCACCACAGG GCCATTTGAT AGAGAGCATC TCCTTTCATA TCTGGAGAAA GAAGCATTGG
301AGCATAAAGA CAGGGAAGAC TATGTGCCCT ACACTGGAGA AAAAAAAGGG AAAATATTTA
361TCCCCAAACA GAAACCTGTA CAGACTTTTA CAGAAGAAAA AGTGTCTCTT GATCCAGAAT
421TAGAAGAAGC TTTGACAAGT GCTTCTGATA CAGAATTGTG TGACCTCGCA GCAATTCTTG
481GGATGCACAA TTTGATAACG AATACAAAGT TCTGTAATAT AATGGGAAGT AGTAATGGTG
541TTGACCAAGA ACATTTTTCA AATGTGGTCA AAGGTGAAAA GATTCTTCCG GTATTTGATG
601AGCCACCAAA TCCAACCAAT GTAGAAGAGA GTTTGAAGAG AACTAAAGAA AACGATGCTC
661ATCTTGTTGA AGTTAATTTG AATAATATAA AGAATATCCC AATTCCAACC CTAAAAGATT
721TTGCAAAGGC TTTGGAAACC AACACACATG TGAAATGTTT CAGTCTTGCA GCCACCCGGA
781GCAATGACCC TGTTGCTACT GCTTTTGCAG AAATGCTGAA AGTGAACAAA ACTTTGAAGA
841GCTTAAATGT GGAGTCCAAC TTTATCACGG GAGTTGGGAT TCTGGCACTG ATTGATGCGT
901TAAGAGATAA TGAAACCCTG GCAGAGCTCA AGATTGACAA TCAGAGGCAG CAGTTGGGGA
961CAGCTGTAGA ATTGGAAATG GCCAAGATGC TTGAGGAAAA TACAAATATC CTTAAATTTG
1021GATATCAGTT TACACAGCAG GGACCACGAA CCAGAGCAGC TAATGCTATA ACAAAAAACA
1081ATGACTTAGT GCGTAAGAGA CGAGTTGAAG GAGATCACCA GTACCCAACT TTCTTGTACA
1141AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)