Construct: ORF ccsbBroadEn_03101
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015002.1_s300c1, BRDN0000385160
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX15 (29907)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29907 | SNX15 | sorting nexin 15 | NM_013306.5 | 100% | 100% | |
| 2 | human | 29907 | SNX15 | sorting nexin 15 | NM_147777.4 | 74.8% | 74.5% | 664_665ins258 |
| 3 | human | 100528018 | ARL2-SNX15 | ARL2-SNX15 readthrough (NMD... | NR_037650.1 | 41.6% | 1_654del;1681_2463del | |
| 4 | mouse | 69024 | Snx15 | sorting nexin 15 | NM_026912.1 | 83.6% | 86.5% | (many diffs) |
| 5 | mouse | 69024 | Snx15 | sorting nexin 15 | XM_006531831.3 | 83.6% | 86.5% | (many diffs) |
| 6 | mouse | 69024 | Snx15 | sorting nexin 15 | XM_011248650.2 | 80.2% | 83.3% | (many diffs) |
| 7 | mouse | 69024 | Snx15 | sorting nexin 15 | XM_011248651.2 | 58.9% | 58.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1092
- ORF length:
- 1026
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CCGCCAGGCG AAGGATGACT TCCTGCGGCA CTACACAGTG TCGGACCCCA 121 GGACTCACCC CAAGGGCTAC ACCGAGTACA AAGTAACCGC GCAGTTCATC TCAAAGAAGG 181 ACCCAGAGGA TGTCAAAGAG GTGGTGGTCT GGAAGCGGTA CAGCGACTTC CGCAAGCTGC 241 ATGGAGACCT GGCCTACACC CACCGCAACC TCTTCCGCCG CCTCGAGGAG TTCCCTGCTT 301 TCCCCCGGGC CCAGGTGTTT GGCCGGTTTG AAGCCTCAGT GATCGAGGAG CGGCGAAAGG 361 GGGCAGAGGA CCTGCTTCGC TTCACTGTGC ACATACCTGC GCTCAACAAC AGCCCCCAGC 421 TCAAGGAGTT CTTCCGGGGT GGGGAGGTGA CCCGACCCTT GGAGGTGTCC AGGGACCTAC 481 ACATCCTGCC ACCCCCTCTG ATCCCCACCC CGCCCCCTGA TGACCCCCGG CTATCCCAAC 541 TGCTCCCTGC AGAAAGGAGG GGCCTCGAGG AATTGGAGGT GCCAGTGGAC CCCCCACCAT 601 CCAGCCCTGC CCAGGAGGCC CTGGATCTCC TCTTTAACTG TGAGAGCACC GAGGAGGCAT 661 CTGGTTCCCC TGCCCGAGGC CCCCTCACCG AGGCTGAGCT TGCCCTCTTC GACCCCTTCT 721 CCAAGGAAGA AGGCGCAGCC CCCAGCCCCA CCCATGTGGC TGAGCTGGCA ACGATGGAGG 781 TGGAGTCTGC AAGGCTGGAC CAGGAACCCT GGGAGCCAGG AGGGCAGGAG GAGGAAGAGG 841 ATGGGGAAGG AGGGCCCACC CCTGCCTACC TAAGCCAGGC CACAGAGCTC ATCACCCAGG 901 CCCTGCGGGA TGAGAAGGCA GGCGCTTACG CTGCTGCACT CCAGGGCTAT CGAGACGGCG 961 TGCACGTCTT GCTTCAGGGA GTCCCCAGTG ACCCGTTGCC TGCCCGCCAG GAAGGTGTGA 1021 AGAAGAAGGC AGCTGAGTAC CTGAAGCGGG CAGAGGAGAT CCTGCGCCTG CACCTGTCTC 1081 AACTCCCACC CTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1141 caatttgttg caacgaac