Construct: ORF ccsbBroadEn_03110

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008819.1_s300c1, BRDN0000398098
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX12 (29934)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29934 SNX12 sorting nexin 12 NM_001256185.1 100% 100%
2 human 29934 SNX12 sorting nexin 12 NM_013346.4 100% 100%
3 human 29934 SNX12 sorting nexin 12 NM_001256188.1 97.5% 97.5% 152_153insGGTTCGCATGCG
4 human 29934 SNX12 sorting nexin 12 NM_001256187.1 59.2% 54.3% 261_262ins125;288_289ins73
5 human 29934 SNX12 sorting nexin 12 NM_001256186.1 56.7% 51.8% 152_153insGGTTCGCATGCG;249_250ins125;276_277ins73
6 mouse 55988 Snx12 sorting nexin 12 NM_001110310.1 94.2% 100% (many diffs)
7 mouse 55988 Snx12 sorting nexin 12 NM_018875.2 90.8% 96.3% (many diffs)
8 mouse 55988 Snx12 sorting nexin 12 NM_001110311.1 89.2% 94.1% (many diffs)
9 mouse 55988 Snx12 sorting nexin 12 XM_011247646.2 73.7% 78.2% (many diffs)
10 mouse 55988 Snx12 sorting nexin 12 XM_011247645.2 70.5% 74.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
555
ORF length:
486
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCGGACACG GCAGTAGCTG ATACCCGGCG CCTTAACTCG AAGCCGCAGG
121ACCTGACCGA CGCTTACGGG CCGCCAAGTA ACTTCCTGGA GATCGACATC TTTAATCCTC
181AGACGGTGGG CGTGGGACGC GCGCGCTTCA CCACCTATGA GGTTCGCATG CGGACAAACC
241TACCTATCTT CAAGCTAAAG GAGTCCTGCG TACGGCGGCG CTACAGTGAC TTTGAGTGGC
301TGAAAAATGA GCTGGAGAGA GATAGCAAGA TTGTAGTACC ACCACTGCCT GGGAAAGCCT
361TGAAGCGGCA GCTCCCTTTC CGAGGAGATG AAGGGATCTT TGAGGAGTCT TTCATCGAAG
421AAAGGAGGCA GGGCCTCGAG CAGTTTATTA ACAAAATTGC TGGGCACCCA CTGGCTCAGA
481ATGAACGCTG CCTACACATG TTCCTGCAAG AGGAGGCAAT TGACAGGAAC TACGTCCCGG
541GGAAGGTGCG CCAGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
601tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)