Construct: ORF ccsbBroadEn_03151

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011823.1_s300c1, BRDN0000394815
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCAF8 (50717)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 50717 DCAF8 DDB1 and CUL4 associated fa... NM_015726.4 100% 100%
2 human 50717 DCAF8 DDB1 and CUL4 associated fa... NR_028106.1 46.3% (many diffs)
3 human 50717 DCAF8 DDB1 and CUL4 associated fa... NR_028104.2 43.4% 1_459del;2251_4125del
4 human 50717 DCAF8 DDB1 and CUL4 associated fa... NR_028103.2 42.6% 1_533del;2325_4199del
5 human 50717 DCAF8 DDB1 and CUL4 associated fa... NR_028105.1 41.8% (many diffs)
6 mouse 98193 Dcaf8 DDB1 and CUL4 associated fa... NM_153555.2 90.5% 95.4% (many diffs)
7 mouse 98193 Dcaf8 DDB1 and CUL4 associated fa... XM_006497065.3 90.5% 95.4% (many diffs)
8 mouse 98193 Dcaf8 DDB1 and CUL4 associated fa... XM_011238889.2 90.5% 95.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1860
ORF length:
1791
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCCAGCAAA GGGAGCAGCA CAGATGGCAG AACAGACTTA GCTAATGGAA
121GCCTGTCTAG CAGTCCAGAG GAGATGTCTG GAGCTGAAGA GGGGAGGGAG ACATCCTCAG
181GCATTGAAGT GGAGGCCTCA GACCTGAGTT TGAGCTTGAC TGGGGATGAT GGTGGCCCCA
241ACCGCACCAG CACAGAAAGT CGAGGCACAG ACACAGAGAG CTCAGGTGAA GATAAGGACT
301CTGACAGCAT GGAGGACACT GGTCATTACT CCATTAATGA TGAAAATCGA GTCCATGACC
361GCTCAGAGGA AGAGGAAGAG GAGGAAGAAG AGGAGGAAGA AGAGCAGCCT CGGCGCCGTG
421TACAGCGCAA GCGGGCTAAC CGTGACCAGG ACTCATCAGA TGATGAGCGG GCCCTAGAGG
481ACTGGGTGTC CTCAGAAACA TCAGCTCTAC CCCGACCTCG CTGGCAAGCC CTCCCTGCCC
541TTCGGGAGCG GGAGCTGGGT TCAAGTGCCC GCTTTGTCTA TGAGGCCTGT GGGGCAAGAG
601TCTTTGTGCA GCGTTTCCGC CTGCAGCATG GGCTTGAGGG CCATACTGGT TGTGTCAATA
661CCCTGCACTT TAACCAGCGC GGCACCTGGC TGGCCAGTGG CAGCGATGAC CTGAAGGTGG
721TGGTGTGGGA TTGGGTACGG CGGCAGCCAG TACTGGACTT TGAGAGTGGC CACAAAAGTA
781ATGTGTTCCA GGCCAAGTTT CTTCCTAACA GTGGTGATTC TACTCTGGCC ATGTGTGCCC
841GTGACGGGCA GGTTCGAGTA GCAGAACTGT CTGCCACACA GTGTTGCAAG AATACAAAAC
901GTGTGGCCCA GCACAAGGGA GCGTCCCACA AGTTGGCACT GGAACCAGAC TCTCCCTGTA
961CGTTCTTATC TGCAGGTGAA GATGCAGTTG TTTTCACCAT TGACCTGAGA CAAGACCGCC
1021CAGCGTCGAA ACTGGTGGTG ACAAAAGAGA AAGAGAAGAA AGTGGGGCTG TATACGATCT
1081ATGTGAATCC TGCCAATACC CACCAGTTTG CAGTGGGTGG ACGAGATCAG TTTGTAAGGA
1141TTTATGACCA GAGGAAAATT GATGAGAATG AGAACAATGG AGTACTCAAG AAGTTCTGTC
1201CTCATCACCT GGTGAACAGT GAGTCCAAAG CAAACATCAC CTGTCTTGTG TACAGCCACG
1261ACGGCACAGA GCTCCTGGCC AGTTACAATG ATGAAGACAT TTACCTCTTC AACTCCTCTC
1321ACAGTGATGG GGCCCAGTAT GTTAAGAGAT ACAAGGGCCA CAGAAATAAT GCCACAGTAA
1381AAGGCGTCAA TTTCTATGGC CCCAAGAGTG AGTTTGTGGT GAGCGGTAGT GACTGTGGGC
1441ACATCTTCCT CTGGGAGAAA TCATCCTGCC AGATTATTCA GTTCATGGAG GGGGACAAGG
1501GAGGCGTGGT AAACTGTCTT GAGCCCCACC CTCACCTGCC TGTGCTGGCA ACCAGTGGCC
1561TAGACCATGA TGTGAAGATC TGGGCACCCA CAGCTGAAGC TTCCACTGAG CTGACAGGGT
1621TAAAAGATGT GATTAAGAAG AACAAGCGGG AGCGGGATGA AGATAGCTTG CACCAAACTG
1681ACCTGTTTGA TAGTCACATG CTGTGGTTCC TTATGCATCA CCTGAGACAG AGACGCCATC
1741ACCGGCGCTG GCGAGAACCT GGGGTTGGGG CCACAGACGC GGACTCTGAT GAGTCTCCCA
1801GCTCCTCAGA CACATCGGAC GAGGAGGAGG GCCCTGACCG GGTGCAGTGC ATGCCATCTT
1861TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1921acgaac

Download FASTA (ORF) (Full)

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