Construct: ORF ccsbBroadEn_03219
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001692.1_s300c1, BRDN0000384931
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF706 (51123)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_001042510.1 | 100% | 100% | |
| 2 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_001267708.1 | 100% | 100% | |
| 3 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_001267709.1 | 100% | 100% | |
| 4 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_016096.4 | 100% | 100% | |
| 5 | human | 51123 | ZNF706 | zinc finger protein 706 | XM_024447172.1 | 100% | 100% | |
| 6 | human | 51123 | ZNF706 | zinc finger protein 706 | XM_024447173.1 | 100% | 100% | |
| 7 | mouse | 68036 | Zfp706 | zinc finger protein 706 | NM_026521.4 | 97.3% | 100% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 294
- ORF length:
- 228
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCGTGGACAG CAGAAAATTC AGTCTCAGCA GAAAAATGCC AAAAAGCAAG 121 CTGGACAAAA GAAGAAACAA GGACATGACC AAAAGGCTGC TGCCAAAGCT GCCTTAATAT 181 ATACCTGCAC TGTCTGTAGG ACACAAATGC CAGACCCTAA GACCTTCAAG CAGCACTTTG 241 AGAGCAAGCA TCCTAAGACT CCACTTCCTC CAGAATTAGC TGATGTTCAG GCATACCCAA 301 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac