Construct: ORF ccsbBroadEn_03253
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004563.1_s300c1, BRDN0000391875
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PAIP2 (51247)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51247 | PAIP2 | poly(A) binding protein int... | NM_001033112.2 | 100% | 100% | |
| 2 | human | 51247 | PAIP2 | poly(A) binding protein int... | NM_016480.5 | 100% | 100% | |
| 3 | human | 51247 | PAIP2 | poly(A) binding protein int... | XM_011543428.1 | 100% | 100% | |
| 4 | human | 51247 | PAIP2 | poly(A) binding protein int... | XM_017009522.1 | 100% | 100% | |
| 5 | human | 51247 | PAIP2 | poly(A) binding protein int... | XM_017009523.2 | 100% | 100% | |
| 6 | human | 51247 | PAIP2 | poly(A) binding protein int... | NR_109830.1 | 25.1% | 1_175del;313_314insATAG;553_1494del | |
| 7 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | NM_026420.2 | 95.8% | 96% | (many diffs) |
| 8 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246987.2 | 95.8% | 96% | (many diffs) |
| 9 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246988.2 | 95.8% | 96% | (many diffs) |
| 10 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246989.1 | 95.8% | 96% | (many diffs) |
| 11 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246990.2 | 95.8% | 96% | (many diffs) |
| 12 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_017317972.1 | 95.8% | 96% | (many diffs) |
| 13 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_017317973.1 | 95.8% | 96% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 447
- ORF length:
- 381
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AGATCCAAGT CGCAGCAGTA CTAGCCCAAG CATCATCAAT GAAGATGTGA 121 TTATTAACGG TCATTCTCAT GAAGATGACA ATCCATTTGC AGAGTACATG TGGATGGAAA 181 ATGAAGAAGA ATTCAACAGA CAAATAGAAG AGGAGTTATG GGAAGAAGAA TTTATTGAAC 241 GCTGTTTCCA AGAAATGCTG GAAGAGGAAG AAGAGCATGA ATGGTTTATT CCAGCTCGAG 301 ATCTCCCACA AACTATGGAC CAAATCCAAG ACCAGTTTAA TGACCTTGTT ATCAGTGATG 361 GCTCTTCTCT GGAAGATCTT GTGGTCAAGA GCAATCTGAA TCCAAATGCA AAGGAGTTTG 421 TTCCTGGGGT GAAGTACGGA AATATTTGCC CAACTTTCTT GTACAAAGTt ggcattataa 481 gaaagcattg cttatcaatt tgttgcaacg aac