Construct: ORF ccsbBroadEn_03299
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004616.1_s300c1, BRDN0000397285
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR83OS (51398)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51398 | WDR83OS | WD repeat domain 83 opposit... | NM_016145.4 | 100% | 100% | |
| 2 | human | 51398 | WDR83OS | WD repeat domain 83 opposit... | XM_017026864.1 | 100% | 100% | |
| 3 | mouse | 414077 | Wdr83os | WD repeat domain 83 opposit... | NM_001001493.2 | 91.8% | 100% | (many diffs) |
| 4 | mouse | 100040052 | Gm2573 | predicted gene 2573 | XM_001474178.5 | 90.5% | 98.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CACTAACAAT ATGTCGGACC CACGGAGGCC GAACAAAGTG CTGAGGTACA 121 AGCCCCCGCC GAGCGAATGT AACCCGGCCT TGGACGACCC GACGCCGGAC TACATGAACC 181 TGCTGGGCAT GATCTTCAGC ATGTGCGGCC TCATGCTTAA GCTGAAGTGG TGTGCTTGGG 241 TCGCTGTCTA CTGCTCCTTC ATCAGCTTTG CCAACTCTCG GAGCTCGGAG GACACGAAGC 301 AAATGATGAG TAGCTTCATG CTGTCCATCT CTGCCGTGGT GATGTCCTAT CTGCAGAATC 361 CTCAGCCCAT GACGCCCCCA TGGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 421 agcattgctt atcaatttgt tgcaacgaac