Construct: ORF ccsbBroadEn_03343
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013403.1_s300c1, BRDN0000456510
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP6V1H (51606)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51606 | ATP6V1H | ATPase H+ transporting V1 s... | NM_015941.4 | 100% | 100% | |
| 2 | human | 51606 | ATP6V1H | ATPase H+ transporting V1 s... | NM_213620.2 | 100% | 100% | |
| 3 | human | 51606 | ATP6V1H | ATPase H+ transporting V1 s... | NM_213619.2 | 96.2% | 96.2% | 525_526ins54 |
| 4 | human | 51606 | ATP6V1H | ATPase H+ transporting V1 s... | XM_006716455.3 | 96.2% | 96.2% | 525_526ins54 |
| 5 | human | 51606 | ATP6V1H | ATPase H+ transporting V1 s... | XM_011517542.1 | 57.1% | 57.1% | 0_1ins621 |
| 6 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | NM_133826.5 | 91% | 98.5% | (many diffs) |
| 7 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | XM_006495433.3 | 91% | 98.5% | (many diffs) |
| 8 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | NM_001310442.1 | 87.5% | 95% | (many diffs) |
| 9 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | XM_006495436.3 | 73.3% | 79.5% | (many diffs) |
| 10 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | XM_006495437.3 | 59.7% | 61.3% | (many diffs) |
| 11 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | XM_006495439.3 | 51.8% | 57.1% | (many diffs) |
| 12 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | XM_011238336.2 | 51.8% | 57.1% | (many diffs) |
| 13 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | XM_011238337.2 | 51.8% | 57.1% | (many diffs) |
| 14 | mouse | 108664 | Atp6v1h | ATPase, H+ transporting, ly... | XM_017321103.1 | 51.8% | 57.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1515
- ORF length:
- 1449
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CAAAATGGAT ATCCGAGGTG CTGTGGATGC TGCTGTCCCC ACCAATATTA 121 TTGCTGCCAA GGCTGCAGAA GTTCGTGCAA ACAAAGTCAA CTGGCAATCC TATCTTCAGG 181 GACAGATGAT TTCTGCTGAA GATTGTGAGT TTATTCAGAG GTTTGAAATG AAACGAAGCC 241 CTGAAGAGAA GCAAGAGATG CTTCAAACTG AAGGCAGCCA GTGTGCTAAA ACATTTATAA 301 ATCTGATGAC TCATATCTGC AAAGAACAGA CCGTTCAGTA TATACTAACT ATGGTGGATG 361 ATATGCTGCA GGAAAATCAT CAGCGTGTTA GCATTTTCTT TGACTATGCA AGATGTAGCA 421 AGAACACTGC GTGGCCCTAC TTTCTGCCAA TGTTGAATCG CCAGGATCCC TTCACTGTTC 481 ATATGGCAGC AAGAATTATT GCCAAGTTAG CAGCTTGGGG AAAAGAACTG ATGGAAGGCA 541 GTGACTTAAA TTACTATTTC AATTGGATAA AAACTCAGCT GAGTTCACAG AAACTGCGTG 601 GTAGCGGTGT TGCTGTTGAA ACAGGAACAG TCTCTTCAAG TGATAGTTCG CAGTATGTGC 661 AGTGCGTGGC CGGGTGTTTG CAGCTGATGC TCCGGGTCAA TGAGTACCGC TTTGCTTGGG 721 TGGAAGCAGA TGGGGTAAAT TGCATAATGG GAGTGTTGAG TAACAAGTGT GGCTTTCAGC 781 TCCAGTATCA AATGATTTTT TCAATATGGC TCCTGGCATT CAGTCCTCAA ATGTGTGAAC 841 ACCTGCGGCG CTATAATATC ATTCCAGTTC TGTCTGATAT CCTTCAGGAG TCTGTCAAAG 901 AGAAAGTAAC AAGAATCATT CTTGCAGCAT TTCGTAACTT TTTAGAAAAA TCAACTGAAA 961 GAGAAACTCG CCAAGAATAT GCCCTGGCTA TGATTCAGTG CAAAGTTCTG AAACAGTTGG 1021 AGAACTTGGA ACAGCAGAAG TACGATGATG AAGATATCAG CGAAGATATC AAATTTCTTT 1081 TGGAAAAACT TGGAGAGAGT GTCCAGGACC TTAGTTCATT TGATGAATAC AGTTCAGAAC 1141 TTAAATCTGG AAGGTTGGAA TGGAGTCCTG TGCACAAATC TGAGAAATTT TGGAGAGAGA 1201 ATGCTGTGAG GTTAAATGAG AAGAATTATG AACTCTTGAA AATCTTGACA AAACTTTTGG 1261 AAGTGTCAGA TGATCCCCAA GTCTTAGCTG TTGCTGCTCA CGATGTTGGA GAATATGTGC 1321 GGCATTATCC ACGAGGCAAA CGGGTCATCG AGCAGCTCGG TGGGAAGCAG CTGGTCATGA 1381 ACCACATGCA TCATGAAGAC CAGCAGGTCC GCTATAATGC TCTGCTGGCC GTGCAGAAGC 1441 TCATGGTGCA CAACTGGGAA TACCTTGGCA AGCAGCTCCA GTCCGAGCAG CCCCAGACCG 1501 CTGCCGCCCG AAGCTACCCA ACTTTCTTGT ACCAAAGTTG Gcattataag aaagcattgc 1561 ttatcaattt gttgcaacga ac