Construct: ORF ccsbBroadEn_03364

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011946.1_s300c1, BRDN0000396635
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ASB2 (51676)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51676 ASB2 ankyrin repeat and SOCS box... NM_016150.5 99.8% 100% 540T>C;1056C>G
2 human 51676 ASB2 ankyrin repeat and SOCS box... XM_017021369.2 90.9% 89.6% (many diffs)
3 human 51676 ASB2 ankyrin repeat and SOCS box... XM_011536835.3 90.5% 90.4% (many diffs)
4 human 51676 ASB2 ankyrin repeat and SOCS box... NM_001202429.2 90.3% 88.6% (many diffs)
5 human 51676 ASB2 ankyrin repeat and SOCS box... XM_005267758.3 90.3% 88.6% (many diffs)
6 human 51676 ASB2 ankyrin repeat and SOCS box... XM_011536834.3 82.2% 80.5% (many diffs)
7 mouse 65256 Asb2 ankyrin repeat and SOCS box... NM_023049.1 79.8% 81.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1827
ORF length:
1761
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CCGCTTCTCC TATGCAGAGT ACTTTTCCCT CTTTCACTCC TGCTCTGCAC
121CCTCCAGGTC CACTGCACCT CCTGAGAGTT CGCCGGCCCG GGCCCCAATG GGCTTGTTCC
181AAGGGGTCAT GCAGAAATAC AGCAGCAGCT TGTTCAAGAC CTCCCAGCTG GCGCCTGCGG
241ACCCCTTGAT AAAGGCCATC AAGGATGGCG ATGAAGAGGC CTTGAAGACC ATGATCAAGG
301AAGGGAAGAA TCTCGCAGAG CCCAACAAGG AGGGCTGGCT GCCGCTGCAC GAGGCCGCAT
361ACTATGGCCA GGTGGGCTGC CTGAAAGTCC TGCAGCGAGC GTACCCAGGG ACCATCGACC
421AGCGCACCCT GCAGGAGGAA ACAGCCGTTT ACTTGGCAAC GTGCAGGGGC CACCTGGACT
481GTCTCCTGTC ACTGCTCCAA GCAGGGGCAG AGCCGGACAT CTCCAACAAA TCCCGAGAGA
541CACCGCTCTA CAAAGCCTGC GAGCGCAAGA ACGCGGAGGC CGTGAAGATT CTGGTGCAGC
601ACAACGCAGA CACCAACCAC CGCTGCAACC GCGGCTGGAC CGCTCTGCAC GAGTCTGTGT
661CTCGCAATGA CCTGGAGGTC ATGCAGATCC TGGTGAGCGG AGGAGCCAAG GTGGAATCCA
721AGAACGCCTA CGGCATCACC CCCTTGTTCG TGGCCGCCCA GAGTGGACAG TTGGAGGCCT
781TGAGGTTCTT AGCCAAGTAC GGTGCTGACA TCAACACGCA GGCCAGCGAC AACGCGTCTG
841CCCTCTACGA GGCCTGCAAG AATGAGCATG AGGAGGTGGT GGAGTTTCTG CTGTCACAGG
901GTGCCGACGC CAACAAGACC AACAAGGACG GCTTGCTCCC GCTGCACATC GCCTCCAAGA
961AGGGCAACTA CAGGATCGTG CAGATGCTGC TGCCGGTGAC CAGCCGCACG CGCATACGCC
1021GTAGCGGCGT CAGTCCGCTG CACCTGGCGG CCGAGCGCAA CCACGACGAG GTGCTGGAGG
1081CGCTGCTGAG CGCGCGCTTC GACGTGAACA CGCCGCTGGC GCCCGAGCGC GCGCGCCTCT
1141ACGAAGACCG GCGCAGCTCC GCGCTGTACT TCGCGGTGGT CAACAACAAC GTGTACGCCA
1201CCGAGCTGCT GCTGCAACAC GGCGCCGACC CCAACCGCGA CGTCATCAGC CCCTTGCTCG
1261TGGCCATCCG CCACGGCTGC CTGCGCACAA TGCAGCTGCT GCTGGACCAC GGCGCGAACA
1321TCGACGCCTA TATCGCCACG CACCCCACCG CCTTCCCCGC CACCATCATG TTCGCCATGA
1381AGTGCCTGTC GCTGCTCAAG TTCCTCATGG ACCTGGGCTG CGACGGCGAG CCCTGCTTCT
1441CATGCCTCTA CGGCAACGGC CCGCACCCGC CGGCCCCGCA GCCCTCCAGC AGGTTCAACG
1501ACGCGCCCGC GGCCGACAAG GAGCCCAGCG TGGTGCAGTT CTGTGAGTTC GTATCTGCCC
1561CAGAGGTGAG CCGCTGGGCG GGGCCCATCA TCGATGTCCT CCTGGACTAC GTGGGCAACG
1621TGCAGCTCTG CTCGCGGCTG AAGGAACACA TCGACAGCTT TGAGGACTGG GCCGTCATCA
1681AGGAGAAGGC AGAACCTCCA AGACCTCTGG CTCACCTTTG CCGACTGCGG GTTCGAAAGG
1741CCATTGGGAA ATACCGTATA AAACTCCTAG ACACCTTGCC GCTCCCAGGC AGGCTGATTA
1801GATACCTGAA ATACGAGAAC ACCCAGTACC CAACTTTCTT GTACAAAGTt ggcattataa
1861gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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