Construct: ORF ccsbBroadEn_03367

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010784.1_s300c1, BRDN0000457008
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PADI3 (51702)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51702 PADI3 peptidyl arginine deiminase 3 NM_016233.2 100% 100%
2 human 51702 PADI3 peptidyl arginine deiminase 3 XM_011541571.2 94.2% 94.2% 0_1ins114
3 human 51702 PADI3 peptidyl arginine deiminase 3 XM_017001463.1 73% 73% 0_1ins537
4 human 51702 PADI3 peptidyl arginine deiminase 3 XM_011541572.2 63.4% 56.7% 1154_1155ins152;1263_1264ins577
5 mouse 18601 Padi3 peptidyl arginine deiminase... NM_011060.4 84.6% 87.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2061
ORF length:
1992
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCGCTGCAG AGAATCGTGC GTGTGTCCCT GGAGCATCCC ACCAGCGCGG
121TGTGTGTGGC TGGCGTGGAG ACCCTCGTGG ACATTTATGG GTCAGTGCCT GAGGGCACAG
181AAATGTTTGA GGTCTATGGG ACGCCTGGCG TGGACATCTA CATCTCTCCC AACATGGAGA
241GGGGCCGGGA GCGTGCAGAC ACCAGGCGGT GGCGCTTTGA CGCGACTTTG GAGATCATCG
301TGGTCATGAA CTCCCCCAGC AATGACCTCA ACGACAGCCA TGTTCAGATT TCCTACCACT
361CCAGCCATGA GCCTCTGCCC CTGGCCTATG CGGTGCTCTA CCTCACCTGT GTTGACATCT
421CTCTGGATTG CGACCTGAAC TGTGAGGGAA GGCAGGACAG GAACTTTGTA GACAAGCGGC
481AGTGGGTCTG GGGGCCCAGT GGGTATGGCG GCATCTTGCT GGTGAACTGT GACCGTGATG
541ATCCGAGCTG TGATGTCCAG GACAATTGTG ACCAGCACGT GCACTGCCTG CAAGACCTGG
601AAGACATGTC TGTCATGGTC CTGCGGACGC AGGGCCCTGC AGCCCTCTTT GATGACCACA
661AACTTGTCCT CCATACCTCC AGCTATGATG CCAAACGGGC ACAGGTCTTC CACATCTGCG
721GTCCTGAGGA TGTGTGTGAG GCCTATAGGC ATGTGCTGGG CCAAGATAAG GTGTCCTATG
781AGGTACCCCG CTTGCATGGG GATGAGGAGC GCTTCTTCGT GGAAGGCCTG TCCTTCCCTG
841ATGCCGGCTT CACAGGACTC ATCTCCTTCC ATGTCACTCT GCTGGACGAC TCCAACGAGG
901ATTTCTCGGC ATCCCCTATC TTCACTGACA CTGTGGTGTT CCGAGTGGCA CCCTGGATCA
961TGACGCCCAG CACTCTGCCA CCCCTAGAGG TGTATGTGTG CCGTGTGAGG AACAACACGT
1021GTTTTGTGGA TGCGGTGGCA GAGCTGGCCA GGAAGGCCGG CTGCAAGCTG ACCATCTGCC
1081CACAGGCCGA GAACCGCAAC GACCGCTGGA TCCAGGATGA GATGGAGCTG GGCTACGTTC
1141AGGCGCCGCA CAAGACCCTC CCGGTGGTCT TTGACTCCCC AAGGAATGGG GAACTGCAGG
1201ATTTCCCTTA CAAAAGAATC CTGGGTCCAG ATTTTGGTTA CGTGACTCGG GAACCACGCG
1261ACAGGTCTGT GAGTGGCCTG GACTCCTTTG GGAACCTGGA GGTCAGCCCT CCAGTGGTGG
1321CCAATGGGAA AGAGTACCCC CTGGGGAGGA TCCTCATTGG GGGCAACCTG CCTGGGTCAA
1381GTGGCCGCAG GGTCACCCAG GTGGTGCGGG ACTTCCTCCA TGCCCAGAAG GTGCAGCCCC
1441CCGTGGAGCT CTTTGTGGAC TGGTTGGCCG TGGGCCATGT GGATGAGTTT CTGAGCTTTG
1501TCCCTGCCCC CGATGGGAAG GGCTTCCGGA TGCTCCTGGC CAGCCCTGGG GCCTGCTTCA
1561AGCTCTTCCA GGAAAAGCAG AAGTGTGGCC ACGGGAGGGC CCTCCTGTTC CAGGGGGTTG
1621TTGATGATGA GCAGGTCAAG ACCATCTCCA TCAACCAGGT GCTCTCCAAT AAAGACCTCA
1681TCAACTACAA TAAGTTTGTG CAGAGCTGCA TCGACTGGAA CCGTGAGGTG CTGAAGCGGG
1741AGCTGGGCCT GGCAGAGTGT GACATCATTG ACATCCCACA GCTCTTCAAG ACCGAGAGGA
1801AAAAAGCAAC GGCCTTCTTC CCTGACTTGG TGAACATGCT GGTGCTGGGG AAGCACCTGG
1861GCATCCCCAA GCCCTTTGGG CCCATCATCA ATGGCTGCTG CTGCCTGGAG GAGAAGGTGC
1921GGTCCCTGCT GGAGCCGCTG GGCCTCCACT GCACCTTCAT TGATGACTTC ACTCCATACC
1981ACATGCTGCA TGGGGAGGTG CACTGTGGCA CCAATGTGTG CAGAAAGCCC TTCTCTTTCA
2041AGTGGTGGAA CATGGTGCCC TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
2101attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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