Construct: ORF ccsbBroadEn_03396
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013695.1_s300c1, BRDN0000386409
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FGFRL1 (53834)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53834 | FGFRL1 | fibroblast growth factor re... | NM_001004356.3 | 100% | 100% | |
| 2 | human | 53834 | FGFRL1 | fibroblast growth factor re... | NM_001004358.1 | 100% | 100% | |
| 3 | human | 53834 | FGFRL1 | fibroblast growth factor re... | NM_001370296.1 | 100% | 100% | |
| 4 | human | 53834 | FGFRL1 | fibroblast growth factor re... | NM_021923.3 | 100% | 100% | |
| 5 | human | 53834 | FGFRL1 | fibroblast growth factor re... | XM_024454093.1 | 100% | 100% | |
| 6 | human | 53834 | FGFRL1 | fibroblast growth factor re... | XM_024454092.1 | 95.6% | 95.6% | 1_69del |
| 7 | mouse | 116701 | Fgfrl1 | fibroblast growth factor re... | NM_054071.2 | 78.1% | 78.4% | (many diffs) |
| 8 | mouse | 116701 | Fgfrl1 | fibroblast growth factor re... | XM_017320618.1 | 78.1% | 78.4% | (many diffs) |
| 9 | mouse | 116701 | Fgfrl1 | fibroblast growth factor re... | NM_001164259.1 | 63.2% | 62.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1578
- ORF length:
- 1512
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC GCCGAGCCCC CTGTTGCTGC TCCTGCTGCC GCCGCTGCTG CTGGGGGCCT 121 TCCCGCCGGC CGCCGCCGCC CGAGGCCCCC CAAAGATGGC GGACAAGGTG GTCCCACGGC 181 AGGTGGCCCG GCTGGGCCGC ACTGTGCGGC TGCAGTGCCC AGTGGAGGGG GACCCGCCGC 241 CGCTGACCAT GTGGACCAAG GATGGCCGCA CCATCCACAG CGGCTGGAGC CGCTTCCGCG 301 TGCTGCCGCA GGGGCTGAAG GTGAAGCAGG TGGAGCGGGA GGATGCCGGC GTGTACGTGT 361 GCAAGGCCAC CAACGGCTTC GGCAGCCTGA GCGTCAACTA CACCCTCGTC GTGCTGGATG 421 ACATTAGCCC AGGGAAGGAG AGCCTGGGGC CCGACAGCTC CTCTGGGGGT CAAGAGGACC 481 CCGCCAGCCA GCAGTGGGCA CGACCGCGCT TCACACAGCC CTCCAAGATG AGGCGCCGGG 541 TGATCGCACG GCCCGTGGGT AGCTCCGTGC GGCTCAAGTG CGTGGCCAGC GGGCACCCTC 601 GGCCCGACAT CACGTGGATG AAGGACGACC AGGCCTTGAC GCGCCCAGAG GCCGCTGAGC 661 CCAGGAAGAA GAAGTGGACA CTGAGCCTGA AGAACCTGCG GCCGGAGGAC AGCGGCAAAT 721 ACACCTGCCG CGTGTCGAAC CGCGCGGGCG CCATCAACGC CACCTACAAG GTGGATGTGA 781 TCCAGCGGAC CCGTTCCAAG CCCGTGCTCA CAGGCACGCA CCCCGTGAAC ACGACGGTGG 841 ACTTCGGGGG GACCACGTCC TTCCAGTGCA AGGTGCGCAG CGACGTGAAG CCGGTGATCC 901 AGTGGCTGAA GCGCGTGGAG TACGGCGCCG AGGGCCGCCA CAACTCCACC ATCGATGTGG 961 GCGGCCAGAA GTTTGTGGTG CTGCCCACGG GTGACGTGTG GTCGCGGCCC GACGGCTCCT 1021 ACCTCAATAA GCTGCTCATC ACCCGTGCCC GCCAGGACGA TGCGGGCATG TACATCTGCC 1081 TTGGCGCCAA CACCATGGGC TACAGCTTCC GCAGCGCCTT CCTCACCGTG CTGCCAGACC 1141 CAAAACCGCC AGGGCCACCT GTGGCCTCCT CGTCCTCGGC CACTAGCCTG CCGTGGCCCG 1201 TGGTCATCGG CATCCCAGCC GGCGCTGTCT TCATCCTGGG CACCCTGCTC CTGTGGCTTT 1261 GCCAGGCCCA GAAGAAGCCG TGCACCCCCG CGCCTGCCCC TCCCCTGCCT GGGCACCGCC 1321 CGCCGGGGAC GGCCCGCGAC CGCAGCGGAG ACAAGGACCT TCCCTCGTTG GCCGCCCTCA 1381 GCGCTGGCCC TGGTGTGGGG CTGTGTGAGG AGCATGGGTC TCCGGCAGCC CCCCAGCACT 1441 TACTGGGCCC AGGCCCAGTT GCTGGCCCTA AGTTGTACCC CAAACTCTAC ACAGACATCC 1501 ACACACACAC ACACACACAC TCTCACACAC ACTCACACGT GGAGGGCAAG GTCCACCAGC 1561 ACATCCACTA TCAGTGCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1621 gcttatcaat ttgttgcaac gaac