Construct: ORF ccsbBroadEn_03441

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011266.1_s300c1, BRDN0000394055
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UGT1A9 (54600)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54600 UGT1A9 UDP glucuronosyltransferase... NM_021027.3 100% 100%
2 human 54576 UGT1A8 UDP glucuronosyltransferase... NM_019076.4 96.4% 94.9% (many diffs)
3 human 54577 UGT1A7 UDP glucuronosyltransferase... NM_019077.2 95.8% 93.3% (many diffs)
4 human 54575 UGT1A10 UDP glucuronosyltransferase... NM_019075.2 95.7% 93.2% (many diffs)
5 human 54578 UGT1A6 UDP glucuronosyltransferase... NM_205862.2 49.2% 48.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1656
ORF length:
1590
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TTGCACAGGG TGGACCAGCC CCCTTCCTCT ATGTGTGTGT CTGCTGCTGA
121CCTGTGGCTT TGCCGAGGCA GGGAAGCTAC TGGTAGTGCC CATGGATGGG AGCCACTGGT
181TCACCATGAG GTCGGTGGTG GAGAAACTCA TTCTCAGGGG GCATGAGGTG GTTGTAGTCA
241TGCCAGAGGT GAGTTGGCAA CTGGGAAGAT CACTGAATTG CACAGTGAAG ACTTATTCAA
301CTTCATATAC CCTGGAGGAT CTGGACCGGG AGTTCAAGGC TTTTGCCCAT GCTCAATGGA
361AAGCACAAGT ACGAAGTATA TATTCTCTAT TAATGGGTTC ATACAATGAC ATTTTTGACT
421TATTTTTTTC AAATTGCAGG AGTTTGTTTA AAGACAAAAA ATTAGTAGAA TACTTAAAGG
481AGAGTTCTTT TGATGCAGTG TTTCTCGATC CTTTTGATAA CTGTGGCTTA ATTGTTGCCA
541AATATTTCTC CCTCCCCTCC GTGGTCTTCG CCAGGGGAAT ACTTTGCCAC TATCTTGAAG
601AAGGTGCACA GTGCCCTGCT CCTCTTTCCT ATGTCCCCAG AATTCTCTTA GGGTTCTCAG
661ATGCCATGAC TTTCAAGGAG AGAGTACGGA ACCACATCAT GCACTTGGAG GAACATTTAT
721TATGCCACCG TTTTTTCAAA AATGCCCTAG AAATAGCCTC TGAAATTCTC CAAACACCTG
781TTACGGAGTA TGATCTCTAC AGCCACACAT CAATTTGGTT GTTGCGAACG GACTTTGTTT
841TGGACTATCC CAAACCCGTG ATGCCCAACA TGATCTTCAT TGGTGGTATC AACTGCCATC
901AGGGAAAGCC GTTGCCTATG GAATTTGAAG CCTACATTAA TGCTTCTGGA GAACATGGAA
961TTGTGGTTTT CTCTTTGGGA TCAATGGTCT CAGAAATTCC AGAGAAGAAA GCTATGGCAA
1021TTGCTGATGC TTTGGGCAAA ATCCCTCAGA CAGTCCTGTG GCGGTACACT GGAACCCGAC
1081CATCGAATCT TGCGAACAAC ACGATACTTG TTAAGTGGCT ACCCCAAAAC GATCTGCTTG
1141GTCACCCGAT GACCCGTGCC TTTATCACCC ATGCTGGTTC CCATGGTGTT TATGAAAGCA
1201TATGCAATGG CGTTCCCATG GTGATGATGC CCTTGTTTGG TGATCAGATG GACAATGCAA
1261AGCGCATGGA GACTAAGGGA GCTGGAGTGA CCCTGAATGT TCTGGAAATG ACTTCTGAAG
1321ATTTAGAAAA TGCTCTAAAA GCAGTCATCA ATGACAAAAG TTACAAGGAG AACATCATGC
1381GCCTCTCCAG CCTTCACAAG GACCGCCCGG TGGAGCCGCT GGACCTGGCC GTGTTCTGGG
1441TGGAGTTTGT GATGAGGCAC AAGGGCGCGC CACACCTGCG CCCCGCAGCC CACGACCTCA
1501CCTGGTACCA GTACCATTCC TTGGACGTGA TTGGTTTCCT CTTGGCCGTC GTGCTGACAG
1561TGGCCTTCAT CACCTTTAAA TGTTGTGCTT ATGGCTACCG GAAATGCTTG GGGAAAAAAG
1621GGCGAGTTAA GAAAGCCCAC AAATCCAAGA CCCATTGCCC AACTTTCTTG TACAAAGTtg
1681gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)