Construct: ORF ccsbBroadEn_03466

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002354.1_s300c1, BRDN0000456495
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BIVM (54841)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54841 BIVM basic, immunoglobulin-like ... NM_017693.4 100% 100%
2 human 54841 BIVM basic, immunoglobulin-like ... NM_001159596.2 53.7% 53.7% 0_1ins687;530_550del
3 human 100533467 BIVM-ERCC5 BIVM-ERCC5 readthrough NM_001204425.1 30.1% 29.8% (many diffs)
4 mouse 246229 Bivm basic, immunoglobulin-like ... NM_144558.4 87% 87.4% (many diffs)
5 mouse 246229 Bivm basic, immunoglobulin-like ... XM_006495998.3 87% 87.4% (many diffs)
6 mouse 246229 Bivm basic, immunoglobulin-like ... XM_006496000.2 87% 87.4% (many diffs)
7 mouse 246229 Bivm basic, immunoglobulin-like ... XM_006496002.2 87% 87.4% (many diffs)
8 mouse 246229 Bivm basic, immunoglobulin-like ... XM_006496004.3 87% 87.4% (many diffs)
9 mouse 246229 Bivm basic, immunoglobulin-like ... XM_017320721.1 87% 87.4% (many diffs)
10 mouse 246229 Bivm basic, immunoglobulin-like ... XM_017320726.1 86.8% 87.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1578
ORF length:
1509
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCTAACGTT GCAGAAACAG AAAGGTCAAA TGATTCTGGA AATGGTGAGC
121ACAAATCTGA GAGAAAGTCA CCTGAAGAGA ATCTACAAGG TGCTGTAAAA TCTTTCTGCA
181CAAGTGCCTC AGGAGCACCC TTGGGTCCCA AAGGAGATGG TCATTATCCA TGGAGTTGTC
241CAGTGACTCA TACACGGGAA AAAATTTATG CCATCTGTTC GGACTATGCC TTTCTCAACC
301AGGCGACCTC AATCTATAAA ACTCCAAATC CATCCCGCTC TCCTTGCCTC CCTGATAGTA
361CCTCTTTATC TGCTGGAAAT AATTCATCAA GATACATTGG TATCCCGACT AGTACATCGG
421AAATTATCTA CAATGAAGAA AATAGCTTGG AAAACTTATC CAACAGCCTG GGCAAGCTAC
481CTCTCGCATG GGAAATTGAT AAATCTGAAT TTGATGGGGT GACCACAAAT TCGAAACACA
541AATCAGGCAA TGCAAAGAAA CAAGTTTCCA AGAGAAAAAC TTCAGATAAA AAGGGAAGAT
601ATCAGAAGGA ATGTCCTCAG CATTCTCCTC TTGAAGATAT TAAACAGCGG AAAGTATTAG
661ACCTCAGACG ATGGTACTGC ATAAGCCGAC CACAGTATAA GACTTCTTGT GGCATCTCTT
721CATTAATTTC TTGTTGGAAT TTCTTATACA GCACAATGGG AGCTGGAAAC CTTCCACCTA
781TTACCCAAGA AGAAGCTTTA CATATTCTGG GCTTTCAACC TCCATTTGAA GATATTAGGT
841TTGGTCCTTT CACGGGGAAT ACAACACTTA TGAGGTGGTT TAGACAAATT AATGACCACT
901TCCATGTAAA AGGATGCTCT TATGTTCTAT ATAAGCCTCA TGGGAAGAAT AAAACAGCAG
961GAGAAACTGC TTCAGGGGCC CTGTCAAAGT TAACCCGTGG ATTGAAAGAT GAATCGCTGG
1021CTTATATCTA TCATTGCCAA AATCATTATT TTTGTCCAAT TGGCTTCGAA GCAACCCCTG
1081TTAAAGCTAA TAAAGCATTC AGCAGGGGAC CTCTCTCACC ACAGGAAGTT GAATATTGGA
1141TCTTAATTGG AGAATCAAGT AGAAAACATC CTGCCATTCA CTGTAAAAAA TGGGCAGATA
1201TTGTTACTGA TCTAAACACT CAAAATCCAG AATACCTGGA TATCCGGCAC TTAGAGAGGG
1261GACTGCAGTA TAGAAAAACA AAGAAGGTTG GGGGAAATTT GCATTGCATC ATAGCATTCC
1321AGAGACTTAA CTGGCAAAGA TTTGGCCTTT GGAACTTTCC ATTTGGAACC ATTAGACAAG
1381AATCACAACC TCCAACACAT GCCCAGGGAA TTGCCAAATC TGAGAGTGAA GACAATATTT
1441CCAAGAAGCA GCATGGGCGT CTGGGCCGGT CTTTCAGTGC TAGTTTCCAT CAGGACTCGG
1501CATGGAAAAA GATGTCTAGT ATCCATGAGA GAAGGAACAG TGGTTACCAG GGTTACAGTG
1561ATTACGATGG GAATGATTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
1621gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)