Construct: ORF ccsbBroadEn_03490
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010975.1_s300c1, BRDN0000396330
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OCIAD1 (54940)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54940 | OCIAD1 | OCIA domain containing 1 | NM_001079839.2 | 100% | 100% | |
| 2 | human | 54940 | OCIAD1 | OCIA domain containing 1 | NM_017830.3 | 100% | 100% | |
| 3 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454106.1 | 100% | 100% | |
| 4 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454107.1 | 100% | 100% | |
| 5 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454108.1 | 100% | 100% | |
| 6 | human | 54940 | OCIAD1 | OCIA domain containing 1 | NM_001168254.1 | 98% | 98% | 1_15del |
| 7 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454105.1 | 94.2% | 94.2% | 1_45del |
| 8 | human | 54940 | OCIAD1 | OCIA domain containing 1 | NM_001079840.2 | 79.1% | 79.1% | 544_545ins153 |
| 9 | human | 54940 | OCIAD1 | OCIA domain containing 1 | NM_001079842.2 | 79.1% | 79.1% | 544_545ins153 |
| 10 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454111.1 | 79.1% | 79.1% | 544_545ins153 |
| 11 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454112.1 | 79.1% | 79.1% | 544_545ins153 |
| 12 | human | 54940 | OCIAD1 | OCIA domain containing 1 | NM_001079841.2 | 75.6% | 74.6% | (many diffs) |
| 13 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_017008329.1 | 75.6% | 74.6% | (many diffs) |
| 14 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454113.1 | 75.6% | 74.6% | (many diffs) |
| 15 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454114.1 | 75.6% | 74.6% | (many diffs) |
| 16 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454109.1 | 74.6% | 74.6% | 1_45del;589_590ins153 |
| 17 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XM_024454110.1 | 71.2% | 70.3% | (many diffs) |
| 18 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XR_002959739.1 | 40% | 1_76del;624_1152del;1341_1833del | |
| 19 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XR_002959740.1 | 38.8% | 1_134del;682_1210del;1399_1891del | |
| 20 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XR_001741265.1 | 37.3% | 1_212del;760_1288del;1477_1969del | |
| 21 | human | 54940 | OCIAD1 | OCIA domain containing 1 | XR_001741266.1 | 33.7% | 1_418del;966_1494del;1683_2175del | |
| 22 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | NM_023429.4 | 86.5% | 85.4% | (many diffs) |
| 23 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | XM_006504075.3 | 86.5% | 85.4% | (many diffs) |
| 24 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | XM_006504076.3 | 86.5% | 85.4% | (many diffs) |
| 25 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | NM_001159887.1 | 67.9% | 68.4% | (many diffs) |
| 26 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | XM_017321082.1 | 67.9% | 68.4% | (many diffs) |
| 27 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | NM_001159888.1 | 64.6% | 63.9% | (many diffs) |
| 28 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | NM_001159889.1 | 64.6% | 63.9% | (many diffs) |
| 29 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | XM_017321083.1 | 64.6% | 63.9% | (many diffs) |
| 30 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | XR_376823.3 | 43.9% | (many diffs) | |
| 31 | mouse | 68095 | Ociad1 | OCIA domain containing 1 | XR_001784740.1 | 42.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 801
- ORF length:
- 735
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TGGGAGGGCT GATTTTCGAG AGCCGAATGC AGAGGTTCCA AGACCAATTC 121 CCCACATAGG GCCTGATTAC ATTCCAACAG AGGAAGAAAG GAGAGTCTTC GCAGAATGCA 181 ATGATGAAAG CTTCTGGTTC AGATCTGTGC CTTTGGCTGC AACAAGTATG TTGATTACTC 241 AAGGATTAAT TAGTAAAGGA ATACTTTCAA GTCATCCCAA ATATGGTTCC ATCCCTAAAC 301 TTATACTTGC TTGTATCATG GGATACTTTG CTGGAAAACT TTCTTATGTG AAAACTTGCC 361 AAGAGAAATT CAAGAAACTT GAAAATTCCC CCCTTGGAGA AGCTTTACGA TCAGGACAAG 421 CACGACGATC TTCACCACCT GGGCACTATT ATCAAAAGTC AAAATATGAC TCAAGTGTGA 481 GTGGTCAATC ATCTTTTGTG ACATCCCCAG CAGCAGACAA CATAGAAATG CTTCCTCATT 541 ATGAGCCAAT TCCATTCAGT TCTTCTATGA ATGAATCTGC TCCCACTGGT ATTACTGATC 601 ATATTGTCCA AGGACCTGAT CCCAACCTTG AAGAAAGTCC TAAAAGAAAA AATATTACAT 661 ATGAGGAATT AAGGAATAAG AACAGAGAGT CATATGAAGT ATCTTTAACA CAAAAGACTG 721 ACCCCTCAGT CAGGCCTATG CATGAAAGAG TGCCAAAAAA AGAAGTCAAA GTAAACAAGT 781 ATGGAGATAC TTGGGATGAG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 841 attgcttatc aatttgttgc aacgaac