Construct: ORF ccsbBroadEn_03492

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007978.1_s300c1, BRDN0000391717
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LPCAT2 (54947)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54947 LPCAT2 lysophosphatidylcholine acy... NM_017839.5 100% 100%
2 human 54947 LPCAT2 lysophosphatidylcholine acy... XM_017023376.1 89.5% 89.5% 0_1ins169;2delT
3 human 54947 LPCAT2 lysophosphatidylcholine acy... XM_005256006.3 56.7% 53.5% (many diffs)
4 human 54947 LPCAT2 lysophosphatidylcholine acy... XM_011523169.3 50.3% 50.3% 0_1ins810
5 mouse 270084 Lpcat2 lysophosphatidylcholine acy... NM_173014.1 84.6% 88.4% (many diffs)
6 mouse 270084 Lpcat2 lysophosphatidylcholine acy... XM_006531051.2 74.8% 78.3% (many diffs)
7 mouse 270084 Lpcat2 lysophosphatidylcholine acy... XM_006531052.2 48.9% 52.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1698
ORF length:
1632
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CCGGTGCGCC CAGGCGGCGG AAGTGGCGGC CACAGTGCCA GGTGCCGGCG
121TCGGGAACGT GGGGCTGCGG CCGCCCATGG TGCCCCGTCA GGCGTCCTTC TTCCCGCCGC
181CGGTGCCGAA CCCCTTCGTG CAGCAGACGC AGATCGGCTC CGCGAGGCGG GTCCAGATTG
241TCCTTCTTGG GATTATCTTG CTTCCAATTC GTGTCTTATT GGTTGCGTTA ATTTTATTAC
301TTGCATGGCC ATTTGCTGCA ATTTCAACAG TATGCTGTCC TGAAAAGCTG ACCCACCCAA
361TAACTGGTTG GAGGAGGAAA ATTACTCAAA CAGCTTTGAA ATTTCTGGGT CGTGCTATGT
421TCTTTTCAAT GGGATTTATA GTTGCTGTAA AAGGAAAGAT TGCAAGTCCT TTGGAAGCAC
481CAGTTTTTGT TGCTGCCCCT CATTCAACAT TCTTTGATGG AATTGCCTGT GTTGTAGCTG
541GGTTACCTTC TATGGTATCT CGAAATGAGA ATGCACAAGT CCCTCTGATT GGCAGACTGT
601TACGGGCTGT GCAACCAGTT TTGGTGTCCC GTGTAGATCC GGATTCCCGA AAAAACACAA
661TAAATGAAAT AATAAAGCGA ACAACATCAG GAGGAGAATG GCCCCAGATA CTAGTTTTCC
721CAGAAGGTAC TTGTACTAAT CGTTCCTGTT TGATTACTTT TAAACCAGGA GCCTTCATTC
781CAGGAGTTCC AGTGCAGCCA GTCCTCCTCA GATACCCAAA CAAGCTGGAT ACTGTGACCT
841GGACATGGCA AGGATATACA TTCATTCAGC TTTGTATGCT TACTTTCTGC CAGCTCTTCA
901CAAAGGTAGA AGTTGAGTTT ATGCCAGTTC AAGTACCAAA TGATGAAGAA AAAAATGATC
961CTGTCCTTTT TGCCAATAAA GTCCGGAATT TAATGGCAGA AGCTCTGGGA ATACCAGTAA
1021CAGATCATAC CTATGAAGAC TGCAGATTGA TGATTTCAGC AGGACAGCTA ACATTGCCTA
1081TGGAAGCTGG GCTGGTGGAA TTTACTAAAA TTAGCCGAAA ATTGAAATTA GATTGGGATG
1141GTGTTCGTAA GCATTTGGAT GAATATGCAT CTATTGCGAG TTCCTCAAAA GGAGGAAGAA
1201TTGGAATTGA AGAATTCGCC AAGTATTTAA AGTTGCCTGT TTCAGATGTC TTGAGACAAC
1261TTTTTGCACT CTTTGACAGG AACCATGATG GCAGCATTGA CTTCCGAGAG TATGTGATTG
1321GCCTGGCTGT CTTGTGCAAC CCTTCCAACA CAGAGGAGAT CATCCAGGTG GCATTTAAGC
1381TGTTTGACGT TGATGAGGAT GGCTACATAA CGGAGGAAGA GTTCTCCACC ATTCTACAGG
1441CTTCCCTTGG AGTGCCTGAC CTTGATGTTT CTGGTCTCTT CAAGGAAATA GCCCAAGGGG
1501ACTCAATTTC CTATGAGGAA TTTAAAAGTT TTGCCTTAAA GCATCCAGAA TATGCTAAGA
1561TATTTACAAC ATACCTAGAC CTCCAGACGT GCCATGTGTT TTCATTACCA AAAGAAGTCC
1621AGACAACCCC CTCCACCGCC AGTAATAAAG TCAGCCCTGA AAAGCATGAA GAGAGTACCT
1681CAGACAAAAA AGATGACTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1741gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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