Construct: ORF ccsbBroadEn_03503
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012193.1_s300c1, BRDN0000388119
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NMRK1 (54981)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | NM_001127603.2 | 100% | 100% | |
| 2 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_017014874.1 | 100% | 100% | |
| 3 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_017014871.1 | 95.3% | 91.3% | (many diffs) |
| 4 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_017014872.1 | 95.3% | 91.3% | (many diffs) |
| 5 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_017014873.1 | 95.3% | 91.3% | (many diffs) |
| 6 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_024447591.1 | 95.3% | 91.3% | (many diffs) |
| 7 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_024447592.1 | 95.3% | 91.3% | (many diffs) |
| 8 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | NM_017881.3 | 87.9% | 87.4% | 318_389del |
| 9 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_006717163.2 | 87.9% | 87.4% | 318_389del |
| 10 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_017014870.2 | 87.9% | 87.4% | 318_389del |
| 11 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | NM_001330678.2 | 84.1% | 80.2% | (many diffs) |
| 12 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | NM_001330679.2 | 84.1% | 80.2% | (many diffs) |
| 13 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_011518817.1 | 84.1% | 80.2% | (many diffs) |
| 14 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_017014868.1 | 84.1% | 80.2% | (many diffs) |
| 15 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_017014869.2 | 84.1% | 80.2% | (many diffs) |
| 16 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XM_024447590.1 | 84.1% | 80.2% | (many diffs) |
| 17 | human | 54981 | NMRK1 | nicotinamide riboside kinase 1 | XR_002956795.1 | 12.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 591
- ORF length:
- 525
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AACATTTATC ATTGGAATCA GTGGTGTGAC AAACAGTGGC AAAACAACAC 121 TGGCTAAGAA TTTGCAGAAA CACCTCCCAA ATTGCAGTGT CATATCTCAG GATGATTTCT 181 TCAAGCCAGA GTCTGAGATA GAGACAGATA AAAATGGATT TTTGCAGTAC GATGTGCTTG 241 AAGCACTTAA CATGGAAAAA ATGATGTCAG CCATTTCCTG CTGGATGGAA AGCGCAAGAC 301 ACTCTGTGGT ATCAACAGAC CAGGAAAGTG CTGAGGAAAT TCCCATTTTA ATCATCGAAG 361 GTTTTCTTCT TTTTAATTAT AATACAAGGG TCTATCAGCC TCCAGACTCT CCGGGATACT 421 TTGATGGCCA TGTGTGGCCC ATGTATCTAA AGTACAGACA AGAAATGCAG GACATCACAT 481 GGGAAGTTGT GTACCTGGAT GGAACAAAAT CTGAAGAGGA CCTCTTTTTG CAAGTATATG 541 AAGATCTAAT ACAAGAACTA GCAAAGCAAA AGTGTTTGCA AGTGACAGCA TACCCAACTT 601 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac