Construct: ORF ccsbBroadEn_03525
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001889.1_s300c1, BRDN0000397924
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XKR8 (55113)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55113 | XKR8 | XK related 8 | NM_018053.4 | 100% | 100% | |
| 2 | human | 55113 | XKR8 | XK related 8 | XM_011541680.3 | 79.8% | 60.7% | 0_1ins109;382_544del |
| 3 | human | 55113 | XKR8 | XK related 8 | XM_011541679.3 | 73.9% | 51.9% | 0_1ins109;382_652del |
| 4 | human | 55113 | XKR8 | XK related 8 | XR_946682.2 | 42.6% | 1_513del;1004_1111del;1391_1392ins415 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1251
- ORF length:
- 1185
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CTGGTCGTCC CGCGGCGCCC TCCTTCGGGA CCTGGTCCTG GGCGTGCTGG 121 GCACCGCCGC CTTCCTGCTC GACCTGGGCA CCGACCTGTG GGCCGCCGTC CAGTATGCGC 181 TCGGCGGCCG CTACCTGTGG GCGGCGCTGG TGCTGGCGCT GCTGGGCCTG GCCTCCGTGG 241 CGCTGCAGCT CTTCAGCTGG CTCTGGCTGC GCGCTGACCC TGCCGGCCTG CACGGGTCGC 301 AGCCCCCGCG CCGCTGCCTG GCGCTGCTGC ATCTCCTGCA GCTGGGTTAC CTGTACAGGT 361 GCGTGCAGGA GCTGCGGCAG GGGCTGCTGG TGTGGCAGCA GGAGGAGCCC TCTGAGTTTG 421 ACTTGGCCTA CGCCGACTTC CTCGCCCTGG ACATCAGCAT GCTGCGGCTC TTCGAGACCT 481 TCTTGGAGAC GGCACCACAG CTCACGCTGG TGCTGGCCAT CATGCTGCAG AGTGGCCGGG 541 CTGAGTACTA CCAGTGGGTT GGCATCTGCA CATCCTTCCT GGGCATCTCG TGGGCACTGC 601 TCGACTACCA CCGGGCCTTG CGCACCTGCC TCCCCTCCAA GCCGCTCCTG GGCCTGGGCT 661 CCTCCGTGAT CTACTTCCTG TGGAACCTGC TGCTGCTGTG GCCCCGAGTC CTGGCTGTGG 721 CCCTGTTCTC AGCCCTCTTC CCCAGCTATG TGGCCCTGCA CTTCCTGGGC CTGTGGCTGG 781 TACTGCTGCT CTGGGTCTGG CTTCAGGGCA CAGACTTCAT GCCGGACCCC AGCTCCGAGT 841 GGCTGTACCG GGTGACGGTG GCCACCATCC TCTATTTCTC CTGGTTCAAC GTGGCTGAGG 901 GCCGCACCCG AGGCCGGGCC ATCATCCACT TCGCCTTCCT CCTGAGTGAC AGCATTCTCC 961 TGGTGGCCAC CTGGGTGACT CATAGCTCCT GGCTGCCCAG CGGGATTCCA CTGCAGCTGT 1021 GGCTGCCTGT GGGATGCGGC TGCTTCTTTC TGGGCCTGGC TCTGCGGCTT GTGTACTACC 1081 ACTGGCTGCA CCCTAGCTGC TGCTGGAAGC CCGACCCTGA CCAGGTAGAC GGGGCCCGGA 1141 GTCTGCTTTC TCCAGAGGGG TATCAGCTGC CTCAGAACAG GCGCATGACC CATTTAGCAC 1201 AGAAGTTTTT CCCCAAGGCT AAGGATGAGG CTGCTTCGCC AGTGAAGGGA TACCCAACTT 1261 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac