Construct: ORF ccsbBroadEn_03537
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016573.1_s300c1, BRDN0000386083
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMC1 (55156)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55156 | ARMC1 | armadillo repeat containing 1 | NM_018120.6 | 100% | 100% | |
| 2 | human | 55156 | ARMC1 | armadillo repeat containing 1 | XM_017013605.2 | 100% | 100% | |
| 3 | human | 55156 | ARMC1 | armadillo repeat containing 1 | XM_005251264.2 | 86.1% | 86.1% | 464_465ins117 |
| 4 | human | 55156 | ARMC1 | armadillo repeat containing 1 | NM_001286702.1 | 63.8% | 47% | 0_1ins116;159_160ins190 |
| 5 | mouse | 74252 | Armc1 | armadillo repeat containing 1 | NM_028840.2 | 90% | 98.2% | (many diffs) |
| 6 | mouse | 74252 | Armc1 | armadillo repeat containing 1 | XM_006535556.1 | 88.4% | 96% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 912
- ORF length:
- 846
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TTCTTCCACT TCCACCATGA GTGAAGAGCC TGACGCTCTA TCGGTAGTTA 121 ACCAGTTACG GGATCTAGCA GCAGATCCGT TAAACAGAAG AGCCATCGTC CAGGATCAGG 181 GATGTCTGCC TGGCCTTATT TTATTTATGG ACCATCCCAA CCCTCCAGTC GTCCACTCCG 241 CTTTGCTTGC TCTTCGATAC TTGGCAGAAT GCCGTGCAAA CAGAGAAAAG ATGAAAGGAG 301 AACTGGGTAT GATGTTGAGC TTACAAAATG TTATACAGAA AACTACAACT CCAGGAGAAA 361 CAAAACTTCT GGCCTCTGAA ATCTATGACA TTCTTCAGTC CTCCAATATG GCAGATGGTG 421 ATAGTTTTAA TGAGATGAAT TCACGTCGAA GGAAAGCTCA ATTTTTTCTG GGAACTACAA 481 ACAAACGTGC CAAAACAGTG GTTTTGCATA TAGATGGCCT TGATGATACG TCTCGGAGAA 541 ATCTATGTGA AGAGGCTTTG TTAAAAATTA AAGGTGTTAT TAGCTTTACT TTTCAAATGG 601 CTGTTCAAAG GTGTGTGGTG CGAATCCGTT CAGATTTGAA AGCTGAGGCT TTGGCATCAG 661 CAATAGCATC AACCAAGGTT ATGAAAGCTC AGCAAGTTGT GAAAAGTGAA AGTGGAGAAG 721 AGATGTTGGT CCCATTCCAA GATACTCCTG TGGAAGTTGA ACAGAACACA GAGCTACCTG 781 ACTACCTGCC TGAGGATGAG AGTCCCACAA AGGAACAGGA CAAAGCGGTG TCCCGGGTCG 841 GCTCACACCC AGAAGGTGGA GCTAGCTGGC TTAGCACAGC TGCAAACTTT TTATCCAGAT 901 CATTTTATTG GTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 961 caatttgttg caacgaac