Construct: ORF ccsbBroadEn_03546
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014029.1_s300c1, BRDN0000395645
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAJC17 (55192)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55192 | DNAJC17 | DnaJ heat shock protein fam... | NM_018163.3 | 100% | 100% | |
| 2 | human | 55192 | DNAJC17 | DnaJ heat shock protein fam... | XM_017022401.2 | 91.5% | 90.7% | (many diffs) |
| 3 | human | 55192 | DNAJC17 | DnaJ heat shock protein fam... | XM_017022402.1 | 61.7% | 58.7% | (many diffs) |
| 4 | human | 55192 | DNAJC17 | DnaJ heat shock protein fam... | XR_002957657.1 | 60.7% | 1_31del;630_692del;1007_1501del | |
| 5 | human | 55192 | DNAJC17 | DnaJ heat shock protein fam... | XM_024449981.1 | 47.7% | 43.7% | (many diffs) |
| 6 | human | 55192 | DNAJC17 | DnaJ heat shock protein fam... | XR_002957656.1 | 37.4% | (many diffs) | |
| 7 | mouse | 69408 | Dnajc17 | DnaJ heat shock protein fam... | NM_139139.2 | 87.9% | 88.8% | (many diffs) |
| 8 | mouse | 69408 | Dnajc17 | DnaJ heat shock protein fam... | XR_374520.2 | 62.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 978
- ORF length:
- 912
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGTGACCAAG GAGCTCTTAC AGATGGACCT GTACGCGCTG CTAGGCATTG 121 AGGAGAAGGC AGCGGACAAA GAGGTAAAGA AGGCGTATAG GCAGAAGGCC CTCTCCTGCC 181 ACCCAGACAA AAATCCAGAT AATCCCAGAG CAGCTGAACT CTTCCACCAG CTTTCTCAGG 241 CCTTGGAGGT GCTGACCGAT GCTGCAGCCA GGGCTGCATA TGACAAGGTC AGGAAAGCCA 301 AGAAGCAAGC AGCAGAGAGG ACCCAGAAAC TTGATGAGAA AAGGAAGAAA GTGAAGCTTG 361 ACCTGGAGGC CCGGGAGCGG CAGGCCCAGG CCCAGGAGAG TGAGGAGGAA GAGGAGAGCC 421 GGAGCACCAG GACACTAGAG CAAGAGATCG AACGCCTGAG AGAAGAGGGT TCCCGGCAGC 481 TGGAGGAACA GCAGAGGCTC ATCCGGGAGC AGATACGCCA GGAGCGTGAC CAGAGGTTGA 541 GAGGAAAGGC AGAAAATACT GAAGGCCAAG GAACCCCCAA ACTAAAGCTA AAATGGAAGT 601 GCAAGAAGGA GGATGAGTCA AAAGGTGGCT ACTCCAAAGA CGTCCTCCTA CGGCTTTTGC 661 AGAAGTATGG TGAGGTTCTC AACCTGGTGC TTTCCAGTAA GAAGCCAGGC ACTGCTGTGG 721 TGGAGTTTGC AACCGTCAAG GCAGCGGAGC TGGCTGTCCA GAATGAAGTT GGCCTGGTGG 781 ATAACCCTCT GAAGATTTCC TGGTTGGAGG GACAGCCCCA GGATGCCGTG GGCCGCAGCC 841 ACTCAGGACT GTCAAAGGGC TCAGTGCTGT CAGAGAGGGA CTACGAGAGC CTCGTCATGA 901 TGCGCATGCG CCAGGCGGCC GAGCGGCAAC AGCTGATCGC ACGGATGCAG CAGGAAGACC 961 AGGAGGGGCC GCCTACGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1021 gcttatcaat ttgttgcaac gaac