Construct: ORF ccsbBroadEn_03586

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005067.1_s300c1, BRDN0000385827
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR33 (55339)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55339 WDR33 WD repeat domain 33 NM_001006622.2 100% 100%
2 human 55339 WDR33 WD repeat domain 33 XM_017004435.1 72.7% 66% (many diffs)
3 human 55339 WDR33 WD repeat domain 33 NM_001006623.3 72.1% 65.1% (many diffs)
4 human 55339 WDR33 WD repeat domain 33 XM_017004436.2 71.8% 65.1% (many diffs)
5 human 55339 WDR33 WD repeat domain 33 XM_005263697.3 25.7% 20.2% (many diffs)
6 human 55339 WDR33 WD repeat domain 33 NM_018383.5 21.8% 17.2% (many diffs)
7 human 55339 WDR33 WD repeat domain 33 XM_011511436.1 21.8% 17.2% (many diffs)
8 mouse 74320 Wdr33 WD repeat domain 33 NM_001170966.1 89.2% 88.9% (many diffs)
9 mouse 74320 Wdr33 WD repeat domain 33 NM_001170970.1 67.4% 67.4% (many diffs)
10 mouse 74320 Wdr33 WD repeat domain 33 NM_001170967.1 66.6% 59.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1044
ORF length:
978
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TACAGAAATT GGTTCTCCTC CTCGTTTTTT CCATATGCCA AGGTTCCAGC
121ACCAGGCACC TCGACAGCTG TTTTATAAGC GACCTGATTT TGCACAACAG CAAGCAATGC
181AACAGCTTAC TTTTGATGGA AAACGAATGA GAAAAGCTGT GAACCGAAAA ACCATAGACT
241ACAATCCATC TGTAATTAAG TATTTGGAGA ACAGAATATG GCAAAGAGAC CAGAGAGATA
301TGCGGGCAAT TCAGCCTGAT GCAGGTTATT ACAATGATCT GGTCCCACCT ATAGGAATGT
361TGAATAATCC TATGAATGCA GTAACAACAA AATTTGTTCG GACATCAACA AATAAAGTAA
421AGTGTCCTGT ATTTGTTGTT AGGTGGACTC CAGAAGGAAG ACGCTTGGTC ACTGGAGCTT
481CTAGTGGGGA GTTTACCCTG TGGAATGGAC TCACTTTCAA TTTTGAAACA ATATTACAGG
541CTCACGACAG CCCAGTGAGG GCCATGACGT GGTCACATAA TGACATGTGG ATGTTGACAG
601CAGACCACGG AGGATATGTG AAATATTGGC AGTCGAACAT GAACAACGTC AAGATGTTCC
661AGGCACATAA GGAGGCGATT AGAGAGGCCA GGTTTATACA CAATATACCA TTTTCTGTAG
721TCCCTATTGT CATGGTTAAA TTATTCTCTA AGTGTATTCT GGGTGCAGAG ATGCATGGGC
781TCTGTCAGTT TCTGGGAAAC TTTCTGCACC CTATAAACAC AATATTTTTC TTTGTTTTCA
841CACATTCACC ATTTTGCTGG CACCTTTCTG AAGTAGTGTT GTCCCGGTAT CAGCCTTTGC
901AATATGTTAG AGATGTACTG TCTGCCGCAT TTTGCACTGG TTTTCTCTTT TCATTTATGA
961TTAATAATGT GTATACGTTA TTCCTTTTTA TTATCTACTG TGTAAGACAA GAATATTTCA
1021TTCCAAATAA AGAATTCAGT CTTTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1081agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)