Construct: ORF ccsbBroadEn_03615
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012305.1_s300c1, BRDN0000388632
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KRBOX4 (55634)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55634 | KRBOX4 | KRAB box domain containing 4 | NM_001129899.1 | 100% | 100% | |
| 2 | human | 55634 | KRBOX4 | KRAB box domain containing 4 | NM_001129900.1 | 94.8% | 94.8% | 235_236insCAGGTGAGGACAGGC |
| 3 | human | 55634 | KRBOX4 | KRAB box domain containing 4 | NM_017776.2 | 53.4% | 47.3% | (many diffs) |
| 4 | human | 55634 | KRBOX4 | KRAB box domain containing 4 | NM_001129898.2 | 51.2% | 46.7% | (many diffs) |
| 5 | human | 641339 | ZNF674 | zinc finger protein 674 | NM_001146291.2 | 15.9% | 13.7% | (many diffs) |
| 6 | human | 641339 | ZNF674 | zinc finger protein 674 | NM_001190417.2 | 15.8% | 13.5% | (many diffs) |
| 7 | human | 641339 | ZNF674 | zinc finger protein 674 | NM_001039891.3 | 15% | 13.8% | (many diffs) |
| 8 | human | 641339 | ZNF674 | zinc finger protein 674 | XM_011543941.3 | 15% | 13.8% | (many diffs) |
| 9 | human | 641339 | ZNF674 | zinc finger protein 674 | XM_011543943.3 | 14.9% | 13.6% | (many diffs) |
| 10 | human | 641339 | ZNF674 | zinc finger protein 674 | XM_011543944.2 | 8.9% | 7.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 360
- ORF length:
- 294
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CATGTCCCAG GAATCATTGA CCTTCAAGGA CGTGTTTGTG GACTTCACCC 121 TGGAGGAGTG GCAGCAACTG GACTCTGCCC AGAAGAACCT CTACAGGGAT GTCATGCTTG 181 AGAACTACAG CCACCTGGTG TCCGTGGGGT ATCTAGTTGC GAAGCCAGAT GTGATCTTCA 241 GGTTGGGACC AGGTGAAGAG TCCTGGATGG CAGATGGGGG GACCCCGGTA CGGACCTGTG 301 CAGGTGAGGA CAGGCCAGAT GTATCCATTT TTGCCTCATG TATTTTGAAG TGCTGTTATT 361 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 421 acgaac