Construct: ORF ccsbBroadEn_03648

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007639.1_s300c1, BRDN0000456074
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEPTIN11 (55752)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55752 SEPTIN11 septin 11 NM_018243.4 100% 100%
2 human 55752 SEPTIN11 septin 11 XM_017008404.1 98.9% 99% 1275_1275delCinsTGCAAGCTTCACA
3 human 55752 SEPTIN11 septin 11 XM_017008403.1 98.8% 99.3% 1274_1275insTGCAAG;1279_1287delTTCTTTATGinsACA
4 human 55752 SEPTIN11 septin 11 NM_001306147.2 96.2% 94.1% (many diffs)
5 human 55752 SEPTIN11 septin 11 XM_017008400.2 96.2% 94.1% (many diffs)
6 human 55752 SEPTIN11 septin 11 XM_017008402.1 95.2% 93.2% (many diffs)
7 human 55752 SEPTIN11 septin 11 XM_017008401.1 95.1% 93.5% (many diffs)
8 human 55752 SEPTIN11 septin 11 XM_006714259.4 86.7% 86.7% 0_1ins171
9 mouse 52398 Sept11 septin 11 NM_001009818.2 88.9% 99.5% (many diffs)
10 mouse 52398 Sept11 septin 11 NM_001310669.1 88.2% 98.3% (many diffs)
11 mouse 52398 Sept11 septin 11 NM_001310671.1 88% 98.8% (many diffs)
12 mouse 52398 Sept11 septin 11 XM_017320981.1 87.9% 99% (many diffs)
13 mouse 52398 Sept11 septin 11 NM_001347377.1 87.8% 98.1% (many diffs)
14 mouse 52398 Sept11 septin 11 XM_006535104.3 87.8% 98.1% (many diffs)
15 mouse 52398 Sept11 septin 11 XM_017320980.1 87.8% 98.1% (many diffs)
16 mouse 52398 Sept11 septin 11 XM_011249532.2 86.5% 94.3% (many diffs)
17 mouse 52398 Sept11 septin 11 XM_006535106.3 86.3% 95.8% (many diffs)
18 mouse 52398 Sept11 septin 11 XM_006535100.3 85.8% 93.2% (many diffs)
19 mouse 52398 Sept11 septin 11 XM_006535101.3 85.8% 93.2% (many diffs)
20 mouse 52398 Sept11 septin 11 XM_011249531.2 85.8% 93.2% (many diffs)
21 mouse 52398 Sept11 septin 11 XM_006535103.3 85.6% 93.6% (many diffs)
22 mouse 52398 Sept11 septin 11 XM_006535102.3 85.5% 93.9% (many diffs)
23 mouse 52398 Sept11 septin 11 XM_017320978.1 85.5% 93.9% (many diffs)
24 mouse 52398 Sept11 septin 11 XM_006535098.3 85.4% 93% (many diffs)
25 mouse 52398 Sept11 septin 11 XM_006535099.3 85.4% 93% (many diffs)
26 mouse 52398 Sept11 septin 11 XM_011249530.2 85.4% 93% (many diffs)
27 mouse 52398 Sept11 septin 11 XM_006535108.3 76.2% 84.9% (many diffs)
28 mouse 52398 Sept11 septin 11 XM_017320982.1 76.2% 84.9% (many diffs)
29 mouse 52398 Sept11 septin 11 XR_389284.3 28.1% (many diffs)
30 mouse 52398 Sept11 septin 11 XR_001784719.1 11.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1353
ORF length:
1287
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CGTGGCCGTG GGGAGACCGT CTAATGAAGA GCTTCGAAAC TTGTCTTTGT
121CTGGCCATGT GGGATTTGAC AGCCTCCCTG ACCAGCTGGT CAACAAGTCT ACTTCTCAAG
181GATTCTGTTT CAACATCCTT TGTGTTGGTG AGACAGGCAT TGGCAAATCC ACGTTAATGG
241ACACTTTGTT CAACACCAAA TTTGAAAGTG ACCCAGCTAC TCACAATGAA CCAGGTGTTC
301GGTTAAAAGC CAGAAGTTAT GAGCTTCAGG AAAGCAATGT ACGGCTGAAG TTAACCATTG
361TTGACACCGT GGGATTTGGA GACCAGATAA ATAAAGATGA CAGCTATAAG CCGATAGTAG
421AATATATTGA TGCCCAGTTC GAGGCCTACC TGCAAGAGGA ATTGAAGATT AAACGTTCTC
481TCTTCAACTA CCATGACACG AGGATCCATG CCTGCCTCTA CTTTATTGCC CCTACTGGAC
541ATTCACTAAA GTCCCTGGAT CTGGTCACCA TGAAAAAGCT GGACAGTAAG GTGAACATCA
601TTCCAATAAT TGCAAAAGCT GACACCATTG CCAAGAATGA ACTGCACAAA TTCAAGAGTA
661AGATCATGAG TGAACTGGTC AGCAATGGGG TCCAGATATA TCAGTTTCCC ACTGATGAAG
721AAACGGTGGC AGAGATTAAC GCAACAATGA GTGTCCATCT CCCATTTGCA GTGGTTGGCA
781GCACCGAAGA GGTGAAGATT GGCAACAAGA TGGCAAAGGC CAGGCAGTAC CCCTGGGGTG
841TGGTGCAGGT TGAGAATGAA AATCATTGCG ATTTTGTGAA ACTTCGAGAG ATGCTGATCC
901GCGTGAACAT GGAGGACTTG CGAGAGCAGA CTCACACCCG CCACTATGAA TTGTACCGAC
961GCTGTAAGCT TGAAGAGATG GGGTTCAAGG ACACTGACCC TGACAGCAAA CCCTTCAGTC
1021TTCAGGAGAC ATATGAAGCA AAAAGGAATG AATTCCTGGG AGAACTGCAG AAGAAAGAAG
1081AAGAAATGAG ACAAATGTTT GTTATGAGAG TGAAGGAGAA AGAAGCTGAA CTTAAGGAGG
1141CAGAGAAAGA GCTTCACGAG AAGTTTGACC TTCTAAAGCG GACACACCAA GAAGAAAAGA
1201AGAAAGTGGA AGACAAGAAG AAGGAGCTTG AGGAGGAGGT GAACAACTTC CAGAAGAAGA
1261AAGCAGCGGC TCAGTTACTA CAGTCCCAGG CCCAGCAATC TGGGGCCCAG CAAACCAAGA
1321AAGACAAGGA TAAGAAAAAT GCAAGCTTCA CATACCCAAC TTTCTTGTAC AAAGTTGGca
1381ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)