Construct: ORF ccsbBroadEn_03663

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004786.1_s300c1, BRDN0000390626
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPP2R2D (55844)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55844 PPP2R2D protein phosphatase 2 regul... NM_018461.5 100% 100%
2 human 55844 PPP2R2D protein phosphatase 2 regul... XM_006717914.3 80.4% 79.6% (many diffs)
3 human 55844 PPP2R2D protein phosphatase 2 regul... NM_001291310.2 63.5% 63.5% 0_1ins495
4 human 55844 PPP2R2D protein phosphatase 2 regul... NR_033191.3 22.4% (many diffs)
5 human 55844 PPP2R2D protein phosphatase 2 regul... XR_002956987.1 21.4% 0_1ins333;1027_4458del
6 mouse 52432 Ppp2r2d protein phosphatase 2, regu... NM_026391.2 90% 97.3% (many diffs)
7 mouse 52432 Ppp2r2d protein phosphatase 2, regu... NM_001347618.1 56.2% 61.5% (many diffs)
8 mouse 52432 Ppp2r2d protein phosphatase 2, regu... XM_006508015.1 56.2% 61.5% (many diffs)
9 mouse 52432 Ppp2r2d protein phosphatase 2, regu... XM_006508016.1 56.2% 61.5% (many diffs)
10 mouse 52432 Ppp2r2d protein phosphatase 2, regu... XM_006508019.2 56.2% 61.5% (many diffs)
11 mouse 52432 Ppp2r2d protein phosphatase 2, regu... XM_017322350.1 56.2% 61.5% (many diffs)
12 mouse 52432 Ppp2r2d protein phosphatase 2, regu... XM_017322352.1 56.2% 61.5% (many diffs)
13 mouse 52432 Ppp2r2d protein phosphatase 2, regu... XM_006508020.3 55.5% 60.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1425
ORF length:
1359
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGGAGCCGGA GGCGGCGGCT GCCCCGCGGG CGGCAACGAC TTCCAGTGGT
121GCTTCTCGCA GGTCAAGGGG GCCATCGACG AGGACGTGGC CGAAGCGGAC ATCATTTCCA
181CCGTTGAGTT TAATTACTCT GGAGATCTTC TTGCAACAGG AGACAAGGGC GGCAGAGTTG
241TTATTTTTCA GCGTGAACAA GAGAATAAAA GCCGCCCTCA TTCTAGGGGA GAATATAATG
301TTTACAGCAC CTTTCAAAGT CATGAACCGG AGTTTGACTA TTTGAAAAGT CTAGAAATTG
361AGGAAAAAAT TAATAAAATT AGGTGGTTAC CACAACAGAA TGCTGCTCAT TTTCTACTGT
421CTACAAATGA TAAAACTATA AAATTATGGA AAATAAGTGA ACGGGATAAA AGAGCAGAAG
481GTTATAACCT GAAAGACGAA GATGGAAGAC TTCGAGACCC ATTTAGGATC ACGGCGCTAC
541GGGTCCCAAT ATTGAAGCCC ATGGATCTTA TGGTAGAAGC GAGTCCACGG CGAATTTTTG
601CAAATGCTCA CACATATCAT ATAAATTCCA TTTCAGTAAA TAGTGATCAT GAAACATATC
661TTTCTGCAGA TGACCTGAGA ATTAATTTAT GGCACTTAGA AATCACAGAT AGAAGCTTTA
721ACATCGTGGA CATCAAGCCT GCTAACATGG AGGAGCTGAC CGAAGTCATC ACTGCAGCCG
781AGTTCCACCC GCACCAGTGC AACGTGTTCG TCTACAGCAG TAGCAAAGGG ACCATCCGCC
841TGTGTGACAT GCGCTCCTCG GCCCTGTGCG ACAGACACTC CAAGTTTTTT GAAGAGCCTG
901AAGATCCCAG CAGTAGGTCC TTCTTCTCAG AAATAATTTC ATCCATATCC GATGTAAAAT
961TCAGTCATAG TGGGCGGTAC ATGATGACCA GAGACTACCT GTCGGTGAAG GTGTGGGACC
1021TCAACATGGA GAGCAGGCCG GTGGAGACCC ACCAGGTCCA CGAGTACCTG CGCAGCAAGC
1081TCTGCTCTCT CTATGAGAAC GACTGCATCT TTGACAAGTT TGAGTGTTGC TGGAACGGTT
1141CGGATAGCGC CATCATGACC GGGTCCTATA ACAACTTCTT CAGGATGTTT GATAGAGACA
1201CGCGGAGGGA TGTGACCCTG GAGGCCTCGA GAGAGAGCAG CAAACCGCGC GCCAGCCTCA
1261AACCCCGGAA GGTGTGTACG GGGGGTAAGC GGAGGAAAGA CGAGATCAGT GTGGACAGTC
1321TGGACTTCAA CAAGAAGATC CTGCACACAG CCTGGCACCC CGTGGACAAT GTCATTGCCG
1381TGGCTGCCAC CAATAACTTG TACATATTCC AGGACAAAAT CAACTACCCA ACTTTCTTGT
1441ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)