Construct: ORF ccsbBroadEn_03684
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006681.1_s300c1, BRDN0000385521
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZMAT5 (55954)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55954 | ZMAT5 | zinc finger matrin-type 5 | NM_001003692.2 | 100% | 100% | |
| 2 | human | 55954 | ZMAT5 | zinc finger matrin-type 5 | NM_001318129.1 | 100% | 100% | |
| 3 | human | 55954 | ZMAT5 | zinc finger matrin-type 5 | NM_019103.2 | 100% | 100% | |
| 4 | mouse | 67178 | Zmat5 | zinc finger, matrin type 5 | NM_026015.2 | 90.7% | 92.9% | (many diffs) |
| 5 | mouse | 67178 | Zmat5 | zinc finger, matrin type 5 | XM_006514786.1 | 90.7% | 92.9% | (many diffs) |
| 6 | mouse | 67178 | Zmat5 | zinc finger, matrin type 5 | XM_006514787.1 | 90.7% | 92.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 576
- ORF length:
- 510
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TATAAAAAAG 61 TTGGCATGGG GAAGCGATAC TTCTGTGACT ACTGCGACCG CTCCTTCCAG GACAACCTCC 121 ACAACCGCAA GAAGCACCTG AACGGGCTGC AGCACCTCAA GGCCAAGAAG GTCTGGTACG 181 ACATGTTCCG AGATGCAGCT GCCATCTTGC TGGATGAGCA GAACAAGCGG CCCTGCAGGA 241 AGTTTCTACT GACAGGCCAG TGCGACTTTG GCTCCAACTG CAGATTTTCC CACATGTCAG 301 AGCGAGACCT GCAGGAGCTG AGCATCCAGG TGGAGGAGGA GAGGCGAGCC AGGGAGTGGC 361 TACTAGATGC TCCTGAGCTC CCCGAGGGCC ATCTGGAGGA CTGGCTGGAG AAGAGAGCCA 421 AGCGGCTGAG CTCAGCCCCA AGTAGCAGGG CTGAACCCAT CAGAACCACT GTCTTCCAGT 481 ACCCCGTGGG CTGGCCACCA GTTCAGGAGC TGCCTCCATC CCTGCGGGCA CCCCCACCTG 541 GGGGGTGGCC TCTGCAGCCC AGAGTCCAGT GGGGCTGCCC AACTTTCTTG TACAAAGTtg 601 gcattataag aaagcattgc ttatcaattt gttgcaacga ac