Transcript: Human NM_019103.2

Homo sapiens zinc finger matrin-type 5 (ZMAT5), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
ZMAT5 (55954)
Length:
1051
CDS:
252..764

Additional Resources:

NCBI RefSeq record:
NM_019103.2
NBCI Gene record:
ZMAT5 (55954)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_019103.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000155117 CAAGAAGGTCTGGTACGACAT pLKO.1 350 CDS 100% 4.050 5.670 N ZMAT5 n/a
2 TRCN0000155936 CTTGCTGGATGAGCAGAACAA pLKO.1 392 CDS 100% 4.950 3.465 N ZMAT5 n/a
3 TRCN0000319227 CTTGCTGGATGAGCAGAACAA pLKO_005 392 CDS 100% 4.950 3.465 N ZMAT5 n/a
4 TRCN0000155138 GAAGGTCTGGTACGACATGTT pLKO.1 353 CDS 100% 4.950 3.465 N ZMAT5 n/a
5 TRCN0000370047 CAACCGCAAGAAGCACCTGAA pLKO_005 308 CDS 100% 4.050 2.835 N ZMAT5 n/a
6 TRCN0000155389 CAGAACCACTGTCTTCCAGTA pLKO.1 647 CDS 100% 4.050 2.835 N ZMAT5 n/a
7 TRCN0000319156 CAGAACCACTGTCTTCCAGTA pLKO_005 647 CDS 100% 4.050 2.835 N ZMAT5 n/a
8 TRCN0000244502 GGTACGACATGTTCCGAGATG pLKO_005 361 CDS 100% 4.050 2.835 N Zmat5 n/a
9 TRCN0000155800 CCTGCAGGAAGTTTCTACTGA pLKO.1 418 CDS 100% 3.000 2.100 N ZMAT5 n/a
10 TRCN0000154646 GAAGTTTCTACTGACAGGCCA pLKO.1 425 CDS 100% 0.660 0.462 N ZMAT5 n/a
11 TRCN0000319155 GAAGTTTCTACTGACAGGCCA pLKO_005 425 CDS 100% 0.660 0.462 N ZMAT5 n/a
12 TRCN0000370052 TTTGGCTCCAACTGCAGATTT pLKO_005 453 CDS 100% 13.200 7.920 N ZMAT5 n/a
13 TRCN0000155636 CATCAGAACCACTGTCTTCCA pLKO.1 644 CDS 100% 2.640 1.584 N ZMAT5 n/a
14 TRCN0000244504 GAACCACTGTCTTCCAGTATC pLKO_005 649 CDS 100% 10.800 7.560 N Zmat5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019103.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03684 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03684 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478625 GCTCCAATGTTGAAGCTCCTAGTC pLX_317 66.6% 100% 100% V5 n/a
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