Transcript: Mouse XM_006514787.1

PREDICTED: Mus musculus zinc finger, matrin type 5 (Zmat5), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zmat5 (67178)
Length:
1419
CDS:
699..1211

Additional Resources:

NCBI RefSeq record:
XM_006514787.1
NBCI Gene record:
Zmat5 (67178)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514787.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244502 GGTACGACATGTTCCGAGATG pLKO_005 808 CDS 100% 4.050 5.670 N Zmat5 n/a
2 TRCN0000244503 TGTCTCATCAGTCACAGTAAA pLKO_005 1246 3UTR 100% 13.200 9.240 N Zmat5 n/a
3 TRCN0000244504 GAACCACTGTCTTCCAGTATC pLKO_005 1096 CDS 100% 10.800 7.560 N Zmat5 n/a
4 TRCN0000155636 CATCAGAACCACTGTCTTCCA pLKO.1 1091 CDS 100% 2.640 1.848 N ZMAT5 n/a
5 TRCN0000173679 CATGTCAGAACAAGATCTGCA pLKO.1 926 CDS 100% 2.640 1.848 N Zmat5 n/a
6 TRCN0000245389 ACCGAAAGAAGCACCTGAATG pLKO_005 757 CDS 100% 10.800 6.480 N Zmat5 n/a
7 TRCN0000244501 TGCCATCTTGCTGGATGAACA pLKO_005 833 CDS 100% 4.950 2.970 N Zmat5 n/a
8 TRCN0000194562 CAACCGAAAGAAGCACCTGAA pLKO.1 755 CDS 100% 4.050 2.430 N Zmat5 n/a
9 TRCN0000155389 CAGAACCACTGTCTTCCAGTA pLKO.1 1094 CDS 100% 4.050 2.430 N ZMAT5 n/a
10 TRCN0000319156 CAGAACCACTGTCTTCCAGTA pLKO_005 1094 CDS 100% 4.050 2.430 N ZMAT5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514787.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03684 pDONR223 100% 90.7% 92.9% None (many diffs) n/a
2 ccsbBroad304_03684 pLX_304 0% 90.7% 92.9% V5 (many diffs) n/a
3 TRCN0000478625 GCTCCAATGTTGAAGCTCCTAGTC pLX_317 66.6% 90.7% 92.9% V5 (many diffs) n/a
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