Construct: ORF ccsbBroadEn_03686
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009666.1_s300c1, BRDN0000395050
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SULF2 (55959)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55959 | SULF2 | sulfatase 2 | NM_001161841.1 | 100% | 100% | |
| 2 | human | 55959 | SULF2 | sulfatase 2 | NM_018837.3 | 100% | 100% | |
| 3 | human | 55959 | SULF2 | sulfatase 2 | XM_005260458.3 | 100% | 100% | |
| 4 | human | 55959 | SULF2 | sulfatase 2 | XM_017027955.2 | 100% | 100% | |
| 5 | human | 55959 | SULF2 | sulfatase 2 | XM_006723830.2 | 99.9% | 100% | 1773T>C |
| 6 | human | 55959 | SULF2 | sulfatase 2 | XM_006723827.2 | 99.8% | 99.8% | 1805_1807delGCA |
| 7 | human | 55959 | SULF2 | sulfatase 2 | XM_006723828.2 | 99.8% | 99.8% | 1805_1807delGCA |
| 8 | human | 55959 | SULF2 | sulfatase 2 | XM_006723829.3 | 99.8% | 99.8% | 1805_1807delGCA |
| 9 | human | 55959 | SULF2 | sulfatase 2 | XM_011528913.1 | 99.8% | 99.8% | 1805_1807delGCA |
| 10 | human | 55959 | SULF2 | sulfatase 2 | XM_011528914.2 | 99.8% | 99.8% | 1773T>C;1805_1807delGCA |
| 11 | human | 55959 | SULF2 | sulfatase 2 | NM_198596.2 | 99.6% | 99.6% | 2493_2494insGGACTTAAA |
| 12 | human | 55959 | SULF2 | sulfatase 2 | XM_011528916.2 | 97.9% | 97.9% | 2528_2529ins54 |
| 13 | human | 55959 | SULF2 | sulfatase 2 | XM_011528915.2 | 97.8% | 97.8% | 1805_1807delGCA;2531_2532ins54 |
| 14 | mouse | 72043 | Sulf2 | sulfatase 2 | NM_001252578.1 | 87.3% | 93.7% | (many diffs) |
| 15 | mouse | 72043 | Sulf2 | sulfatase 2 | NM_028072.5 | 87.3% | 93.7% | (many diffs) |
| 16 | mouse | 72043 | Sulf2 | sulfatase 2 | XM_006500209.3 | 87.3% | 93.7% | (many diffs) |
| 17 | mouse | 72043 | Sulf2 | sulfatase 2 | XM_006500211.2 | 87.3% | 93.7% | (many diffs) |
| 18 | mouse | 72043 | Sulf2 | sulfatase 2 | XM_017319268.1 | 87.3% | 93.7% | (many diffs) |
| 19 | mouse | 72043 | Sulf2 | sulfatase 2 | NM_001252579.1 | 84.1% | 90.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2679
- ORF length:
- 2610
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCCCCCCG AGCCTCGTGC TGTGCTTGCT GTCCGCAACT GTGTTCTCCC 121 TGCTGGGTGG AAGCTCGGCC TTCCTGTCGC ACCACCGCCT GAAAGGCAGG TTTCAGAGGG 181 ACCGCAGGAA CATCCGCCCC AACATCATCC TGGTGCTGAC GGACGACCAG GATGTGGAGC 241 TGGGTTCCAT GCAGGTGATG AACAAGACCC GGCGCATCAT GGAGCAGGGC GGGGCGCACT 301 TCATCAACGC CTTCGTGACC ACACCCATGT GCTGCCCCTC ACGCTCCTCC ATCCTCACTG 361 GCAAGTACGT CCACAACCAC AACACCTACA CCAACAATGA GAACTGCTCC TCGCCCTCCT 421 GGCAGGCACA GCACGAGAGC CGCACCTTTG CCGTGTACCT CAATAGCACT GGCTACCGGA 481 CAGCTTTCTT CGGGAAGTAT CTTAATGAAT ACAACGGCTC CTACGTGCCA CCCGGCTGGA 541 AGGAGTGGGT CGGACTCCTT AAAAACTCCC GCTTTTATAA CTACACGCTG TGTCGGAACG 601 GGGTGAAAGA GAAGCACGGC TCCGACTACT CCAAGGATTA CCTCACAGAC CTCATCACCA 661 ATGACAGCGT GAGCTTCTTC CGCACGTCCA AGAAGATGTA CCCGCACAGG CCAGTCCTCA 721 TGGTCATCAG CCATGCAGCC CCCCACGGCC CTGAGGATTC AGCCCCACAA TATTCACGCC 781 TCTTCCCAAA CGCATCTCAG CACATCACGC CGAGCTACAA CTACGCGCCC AACCCGGACA 841 AACACTGGAT CATGCGCTAC ACGGGGCCCA TGAAGCCCAT CCACATGGAA TTCACCAACA 901 TGCTCCAGCG GAAGCGCTTG CAGACCCTCA TGTCGGTGGA CGACTCCATG GAGACGATTT 961 ACAACATGCT GGTTGAGACG GGCGAGCTGG ACAACACGTA CATCGTATAC ACCGCCGACC 1021 ACGGTTACCA CATCGGCCAG TTTGGCCTGG TGAAAGGGAA ATCCATGCCA TATGAGTTTG 1081 ACATCAGGGT CCCGTTCTAC GTGAGGGGCC CCAACGTGGA AGCCGGCTGT CTGAATCCCC 1141 ACATCGTCCT CAACATTGAC CTGGCCCCCA CCATCCTGGA CATTGCAGGC CTGGACATAC 1201 CTGCGGATAT GGACGGGAAA TCCATCCTCA AGCTGCTGGA CACGGAGCGG CCGGTGAATC 1261 GGTTTCACTT GAAAAAGAAG ATGAGGGTCT GGCGGGACTC CTTCTTGGTG GAGAGAGGCA 1321 AGCTGCTACA CAAGAGAGAC AATGACAAGG TGGACGCCCA GGAGGAGAAC TTTCTGCCCA 1381 AGTACCAGCG TGTGAAGGAC CTGTGTCAGC GTGCTGAGTA CCAGACGGCG TGTGAGCAGC 1441 TGGGACAGAA GTGGCAGTGT GTGGAGGACG CCACGGGGAA GCTGAAGCTG CATAAGTGCA 1501 AGGGCCCCAT GCGGCTGGGC GGCAGCAGAG CCCTCTCCAA CCTCGTGCCC AAGTACTACG 1561 GGCAGGGCAG CGAGGCCTGC ACCTGTGACA GCGGGGACTA CAAGCTCAGC CTGGCCGGAC 1621 GCCGGAAAAA ACTCTTCAAG AAGAAGTACA AGGCCAGCTA TGTCCGCAGT CGCTCCATCC 1681 GCTCAGTGGC CATCGAGGTG GACGGCAGGG TGTACCACGT AGGCCTGGGT GATGCCGCCC 1741 AGCCCCGAAA CCTCACCAAG CGGCACTGGC CAGGGGCCCC TGAGGACCAA GATGACAAGG 1801 ATGGTGGGGA CTTCAGTGGC ACTGGAGGCC TTCCCGACTA CTCAGCCGCC AACCCCATTA 1861 AAGTGACACA TCGGTGCTAC ATCCTAGAGA ACGACACAGT CCAGTGTGAC CTGGACCTGT 1921 ACAAGTCCCT GCAGGCCTGG AAAGACCACA AGCTGCACAT CGACCACGAG ATTGAAACCC 1981 TGCAGAACAA AATTAAGAAC CTGAGGGAAG TCCGAGGTCA CCTGAAGAAA AAGCGGCCAG 2041 AAGAATGTGA CTGTCACAAA ATCAGCTACC ACACCCAGCA CAAAGGCCGC CTCAAGCACA 2101 GAGGCTCCAG TCTGCATCCT TTCAGGAAGG GCCTGCAAGA GAAGGACAAG GTGTGGCTGT 2161 TGCGGGAGCA GAAGCGCAAG AAGAAACTCC GCAAGCTGCT CAAGCGCCTG CAGAACAACG 2221 ACACGTGCAG CATGCCAGGC CTCACGTGCT TCACCCACGA CAACCAGCAC TGGCAGACGG 2281 CGCCTTTCTG GACACTGGGG CCTTTCTGTG CCTGCACCAG CGCCAACAAT AACACGTACT 2341 GGTGCATGAG GACCATCAAT GAGACTCACA ATTTCCTCTT CTGTGAATTT GCAACTGGCT 2401 TCCTAGAGTA CTTTGATCTC AACACAGACC CCTACCAGCT GATGAATGCA GTGAACACAC 2461 TGGACAGGGA TGTCCTCAAC CAGCTACACG TACAGCTCAT GGAGCTGAGG AGCTGCAAGG 2521 GTTACAAGCA GTGTAACCCC CGGACTCGAA ACATGGACCT GGGACTTAAA GATGGAGGAA 2581 GCTATGAGCA ATACAGGCAG TTTCAGCGTC GAAAGTGGCC AGAAATGAAG AGACCTTCTT 2641 CCAAATCACT GGGACAACTG TGGGAAGGCT GGGAAGGTTT GCCAACTTTC TTGTACAAAG 2701 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac