Construct: ORF ccsbBroadEn_03703

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006182.1_s300c1, BRDN0000457192
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGA6 (56109)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56109 PCDHGA6 protocadherin gamma subfami... NM_032086.1 100% 100%
2 human 56109 PCDHGA6 protocadherin gamma subfami... NM_018919.3 87.3% 86.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2523
ORF length:
2454
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGCCTCCG CAGAGGCATC CGCAGCGCAG CGAGCAGGTC CTGCTCCTCA
121CGCTCCTGGG GACGCTGTGG GGGGCCGCGG CAGCGCAGAT CCGCTACTCT ATTCCCGAGG
181AGCTGGAGAA AGGCTCCTTC GTAGGCAACA TCGTCAAGGA TCTGGGACTG GAGCCCCAGG
241AGTTGGCGGA GCACGGAGTC CGCATCGTCT CCAGAGGTAG GATGCAGCTT TTCTCTCTGA
301ATCCGCGAAA CGGCAGCTTG GTCACCGCGG GTAGGATAGA CCGCGAGGAG CTCTGTGCTC
361AGAGCCCGCG GTGTCTGGTG AGTTTTAACA TCCTTGTCGA GGATAAACTG AATCTTTATC
421CCGTGGAAGT GGAAATAGTG GACATTAATG ACAATACACC CCGATTCTTA AAGGAAGAAT
481TGGAAGTGAA AATTCTCGAA AACGCAGCTC CATCCTCTCG TTTTCCACTA ATGGAGGTCT
541ATGACCCTGA TGTGGGAATG AACTCCCTTC AGGGATTTAA GCTCAGTGGT AATAGTCACT
601TCTCAGTGGA CGTGCAAAGC GAAGCCCATG GGCCCAAGTA CCCGGAGCTG GTGCTGGAGG
661GCACACTGGA CCGGGAAGGA GAAGCCGTTT ACCGCCTGGT CCTTACTGCC ATGGATGGCG
721GCGACCCTGT CCGCTCAAGC GTCGCCCAAA TTCTGGTAAC AGTTCTAGAT GTGAATGACA
781ACACTCCAAT GTTTACTCAG CCTGTCTACC GTGTAAGTGT TCCTGAAAAC CTGCCAGTAG
841GCACACCAGT GTTGGCAGTG ACTGCCACCG ACCAGGATGA AGGAGTCCAC GGGGAAGTAA
901CTTATTCCTT TGTGAAGATT ACAGAAAAGA TCTCACAAAT TTTCTGTTTG AATGTTTTGA
961CTGGAGAAAT TTCAACTTCT GCAAATCTAG ACTATGAGGA CTCGAGTTTT TATGAGCTGG
1021GTGTTGAAGC CCGGGATGGG CCAGGTCTTC GAGACAGAGC GAAAGTCTTA ATAACTATCT
1081TGGATGTCAA TGATAATGTA CCAGAAGTGG TTGTTACATC TGGAAGCAGA ACAATTGCTG
1141AAAGTGCACC TCCAGGAACA GTAATCGCCC TTTTTCAAGT GTTCGATCGA GACTCTGGCC
1201TGAATGGCCT GGTAACCTGT TCCATCCCGA GAAGTCTCCC ATTTGAATTG GAAAAATCAG
1261TTGGCAATTA TTATCGATTA GTGACAAATG CAGCTCTAGA CCGGGAAGAG GTATTCTTGT
1321ACAACATCAC TGTGACAGCC ACGGACAAAG GAACACCACC TCTGTCTACA GAAACAATCA
1381TCTCTCTAAA TGTGGCAGAC ACCAACGACA ACCCGCCCAC CTTCCCCCAT TCATCCTACT
1441CAGTCTATGT CCTTGAAAAC AACCCCAGGG GTGCCTCCAT CTTCTCTGTG AATGCACTGG
1501ACCCTGACGT GGACCAGAAC GCCCAAGTCT CCTACTCACT GGCAGAAGAC ACCCTCCAGG
1561GGGCGCCCCT GTCCTCCTAC GTGTCCATCA ACTCCGACAC TGGGATTCTG TACGCCCTGC
1621GCTCCTTCGA CTATGAGCAG TTGAGAGACC TACAGCTGTG GGTGACAGCC AGCGACAGCG
1681GGGACCCGCC TCTTAGCAGC AACGTGTCAC TGAGCCTGTT TGTGCTGGAC CAGAATGACA
1741ATGCGCCCGA GATCCTGTAC CCCGCCCTCC CCACAGACGG TTCCACTGGC GTGGAGCTGG
1801CGCCCCGCTC CGCAGAGCCC GGCTACCTGG TGACCAAGGT GGTGGCGGTG GACAGAGACT
1861CGGGCCAGAA CGCCTGGCTG TCCTACCGCC TGCTCAAGGC CAGCGAGCCA GGACTTTTCT
1921CAGTGGGCCT GCACACGGGC GAGGTGCGCA CGGCGCGCGC CCTGCTGGAC AGAGACGCGC
1981TCAAGCAGAG CCTAGTGGTG GCCGTCCAGG ACCACGGCCA GCCCCCTCTC TCCGCCACTG
2041TCACGCTCAC CGTGGCCGTG GCCGACAGGA TCCCCGACAT CCTGGCCGAC CTGGGCAGCC
2101TCGAGCCCTC CGCCAAACCC AACGATTCGG ACCTCACTCT GTACCTGGTG GTGGCGGTGG
2161CCGCGGTCTC CTGCGTCTTC CTGGCCTTCG TCATCGTGCT GCTGGCGCTC AGACTGCAGC
2221GCTGGCACAA GTCACGCCTG CTGCAGGCTT CGGGAGGTGG CTTAGCGAGC ATGCCCGGCT
2281CGCACTTTGT GGGCGTGGAA GGGGTTCGGG CTTTCCTGCA GACCTATTCC CACGAGGTCT
2341CACTCACTGC AGACTCGCGT AAGAGTCATC TGATTTTCCC CCAGCCCAAC TATGCCGACA
2401CGCTTATCAA CCAGGAGAGC TATGAGAAAA GCGAGCCTCT TCTGATAACT CAGGATTTAC
2461TTGAAACGAA AGGAGAACCC AGGCAACTTC AGGTGAGTTT CTTTCCGCCT AAGCGGGAAG
2521AGTTGCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt
2581gcaacgaac

Download FASTA (ORF) (Full)