Construct: ORF ccsbBroadEn_03712
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009457.1_s300c1, BRDN0000394780
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LMOD3 (56203)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56203 | LMOD3 | leiomodin 3 | NM_001304418.2 | 100% | 100% | |
| 2 | human | 56203 | LMOD3 | leiomodin 3 | NM_198271.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1749
- ORF length:
- 1680
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCAGAGCAC AGCAGAAATT CAGATCAAGA AGAACTTCTC GATGAGGAGA 121 TTAATGAAGA TGAAATCTTG GCCAACTTGT CTGCTGAAGA ACTGAAAGAA CTGCAGTCGG 181 AAATGGAAGT CATGGCCCCT GACCCCAGCC TTCCCGTGGG AATGATTCAG AAAGATCAAA 241 CTGACAAGCC ACCGACAGGA AACTTCAATC ATAAATCTCT TGTTGATTAT ATGTATTGGG 301 AAAAGGCATC CAGGCGCATG CTGGAAGAGG AACGAGTTCC TGTCACCTTT GTGAAATCCG 361 AGGAAAAGAC TCAAGAAGAG CATGAAGAAA TAGAAAAACG TAATAAAAAT ATGGCCCAGT 421 ATTTAAAAGA AAAGCTCAAT AATGAAATAG TTGCAAATAA AAGAGAATCA AAGGGCAGCA 481 GCAATATCCA AGAAACAGAT GAAGAAGATG AAGAAGAAGA AGATGATGAT GATGACGACG 541 AAGGAGAAGA TGATGGTGAA GAGAGTGAAG AAACGAACAG AGAAGAGGAA GGCAAAGCAA 601 AGGAACAAAT TAGAAATTGT GAGAACAACT GCCAGCAGGT AACTGACAAA GCATTCAAAG 661 AACAGAGAGA CAGACCAGAG GCCCAAGAAC AAAGTGAGAA AAAAATATCG AAATTAGATC 721 CTAAGAAGTT AGCTCTAGAC ACCAGCTTTT TGAAGGTAAG TACAAGGCCT TCAGGAAACC 781 AGACAGACCT GGATGGGAGC TTGAGGAGAG TTAGGAAAAA TGATCCTGAC ATGAAGGAAC 841 TCAACCTGAA CAACATTGAA AACATCCCCA AAGAAATGTT ACTGGACTTT GTCAATGCAA 901 TGAAGAAAAA CAAGCACATC AAAACATTCA GTTTAGCCAA TGTGGGTGCA GATGAGAATG 961 TAGCATTTGC CTTGGCTAAC ATGTTGCGTG AAAATAGAAG CATCACCACT CTCAACATCG 1021 AGTCCAATTT CATCACAGGT AAAGGGATTG TGGCCATCAT GAGGTGTCTC CAGTTTAATG 1081 AGACGCTAAC TGAGCTTCGG TTTCACAATC AGAGGCACAT GTTGGGTCAC CATGCTGAAA 1141 TGGAAATAGC CAGGCTTTTG AAGGCAAACA ACACTCTCCT GAAGATGGGC TACCATTTTG 1201 AGCTTCCGGG TCCCAGAATG GTGGTCACTA ATCTGCTCAC CAGGAATCAG GATAAACAAA 1261 GGCAGAAACG ACAGGAAGAG CAAAAACAGC AGCAACTCAA GGAACAGAAG AAGCTGATAG 1321 CCATGTTAGA GAATGGGTTG GGGCTGCCCC CTGGGATGTG GGAGCTGTTG GGAGGACCCA 1381 AGCCAGATTC CAGAATGCAG GAATTCTTCC AGCCACCGCC ACCTCGGCCT CCCAACCCCC 1441 AAAATGTCCC CTTTAGTCAA CGCAGTGAAA TGATGAAAAA GCCATCGCAG GCCCCGAAGT 1501 ACAGGACAGA CCCTGACTCC TTCCGGGTGG TGAAGCTGAA GAGAATCCAG CGCAAATCTC 1561 GGATGCCGGA AGCCAGAGAA CCACCCGAGA AAACCAACCT CAAAGATGTC ATCAAAACGC 1621 TCAAGCCAGT GCCGAGAAAC AGGCCACCCC CATTGGTGGA AATCACTCCC AGAGATCAGC 1681 TGCTAAACGA CATTCGTCAC AGCAGTGTCG CCTATCTTAA ACCTGTGCAA CTGCCAAAAG 1741 AACTGGCGTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1801 tttgttgcaa cgaac