Construct: ORF ccsbBroadEn_03719
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013084.1_s300c1, BRDN0000386486
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC7A10 (56301)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56301 | SLC7A10 | solute carrier family 7 mem... | NM_019849.3 | 100% | 100% | |
| 2 | human | 56301 | SLC7A10 | solute carrier family 7 mem... | XM_024451609.1 | 94.2% | 53.4% | 912_996del;1655_1665del |
| 3 | human | 56301 | SLC7A10 | solute carrier family 7 mem... | XM_006723284.2 | 84.8% | 84.8% | 1013_1014ins237 |
| 4 | human | 56301 | SLC7A10 | solute carrier family 7 mem... | XR_935841.1 | 80.9% | 1_19del;1035_1036ins97;1492_1721del | |
| 5 | human | 56301 | SLC7A10 | solute carrier family 7 mem... | XM_024451610.1 | 80.5% | 78.3% | 1_124del;274_275ins205 |
| 6 | human | 56301 | SLC7A10 | solute carrier family 7 mem... | XM_011527119.1 | 79.2% | 75.7% | 912_996del;1100_1425del |
| 7 | human | 56301 | SLC7A10 | solute carrier family 7 mem... | XM_011527120.1 | 64.8% | 59.2% | (many diffs) |
| 8 | mouse | 53896 | Slc7a10 | solute carrier family 7 (ca... | NM_017394.4 | 87.2% | 91.6% | (many diffs) |
| 9 | mouse | 53896 | Slc7a10 | solute carrier family 7 (ca... | XM_017322367.1 | 83% | 87.2% | (many diffs) |
| 10 | mouse | 53896 | Slc7a10 | solute carrier family 7 (ca... | XM_017322364.1 | 74.7% | 78.4% | (many diffs) |
| 11 | mouse | 53896 | Slc7a10 | solute carrier family 7 (ca... | XM_006540197.3 | 73.1% | 67.2% | (many diffs) |
| 12 | mouse | 53896 | Slc7a10 | solute carrier family 7 (ca... | XM_017322365.1 | 69.6% | 64.1% | (many diffs) |
| 13 | mouse | 53896 | Slc7a10 | solute carrier family 7 (ca... | XM_017322366.1 | 66.7% | 59.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1635
- ORF length:
- 1569
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CGGCCACACG CAGCAGCCGA GCGGGCGCGG GAACCCCAGG CCTGCGCCCT 121 CGCCCTCCCC AGTCCCAGGG ACCGTCCCCG GCGCCTCGGA GCGGGTGGCG CTCAAGAAGG 181 AGATCGGGCT GCTGAGCGCC TGCACCATCA TCATCGGGAA CATCATCGGC TCGGGCATCT 241 TCATCTCGCC CAAGGGGGTC CTGGAGCACT CAGGCTCCGT GGGTCTGGCC CTGTTCGTCT 301 GGGTCCTGGG TGGGGGCGTG ACGGCTCTGG GCTCCCTCTG CTATGCAGAG CTGGGAGTCG 361 CCATCCCCAA GTCTGGCGGG GACTACGCCT ACGTCACAGA GATCTTCGGG GGCCTGGCTG 421 GCTTTCTGCT GCTCTGGAGC GCCGTCCTCA TCATGTACCC CACCAGCCTT GCTGTCATCT 481 CCATGACCTT CTCCAACTAC GTGCTGCAGC CCGTGTTCCC CAACTGCATC CCCCCCACCA 541 CAGCCTCCCG GGTGCTGTCC ATGGCCTGCC TGATGCTCCT GACATGGGTG AACAGCTCCA 601 GTGTGCGCTG GGCCACGCGC ATCCAGGACA TGTTCACAGG CGGGAAGCTG CTGGCCTTGT 661 CCCTCATCAT CGGCGTGGGC CTTCTCCAGA TCTTCCAAGG ACACTTCGAG GAGCTGAGGC 721 CCAGCAATGC CTTTGCTTTC TGGATGACGC CCTCCGTGGG ACACCTGGCC CTGGCCTTCC 781 TCCAGGGCTC CTTCGCCTTC AGTGGCTGGA ACTTCCTCAA CTATGTCACC GAGGAGATGG 841 TTGACGCCCG AAAGAACCTA CCTCGCGCCA TCTTCATCTC CATCCCACTG GTGACCTTCG 901 TGTACACGTT CACCAACATT GCCTACTTCA CGGCCATGTC CCCCCAGGAG CTGCTCTCCT 961 CCAATGCGGT GGCTGTGACC TTCGGGGAGA AGCTGCTGGG CTACTTTTCT TGGGTCATGC 1021 CTGTCTCCGT GGCTCTGTCA ACCTTCGGAG GGATCAATGG TTACCTGTTC ACCTACTCCA 1081 GGCTGTGCTT CTCTGGAGCC CGCGAGGGGC ACCTGCCCAG CCTGCTGGCC ATGATCCACG 1141 TCAGACACTG CACCCCCATC CCCGCCCTCC TCGTCTGTTG CGGGGCCACA GCCGTCATCA 1201 TGCTCGTGGG CGACACGTAC ACGCTCATCA ACTATGTGTC CTTCATCAAC TACCTCTGCT 1261 ACGGCGTCAC CATCCTGGGC CTGCTGCTGC TGCGCTGGAG GCGGCCTGCA CTCCACAGGC 1321 CCATCAAGGT GAACCTTCTC ATCCCCGTGG CGTACTTGGT CTTCTGGGCC TTCCTGCTGG 1381 TCTTCAGCTT CATCTCAGAG CCTATGGTCT GTGGGGTCGG CGTCATCATC ATCCTTACGG 1441 GGGTGCCCAT TTTCTTTCTG GGAGTGTTCT GGAGAAGCAA ACCAAAGTGT GTGCACAGAC 1501 TCACAGAGTC CATGACACAC TGGGGCCAGG AGCTGTGTTT CGTGGTCTAC CCCCAGGACG 1561 CCCCCGAAGA GGAGGAGAAT GGCCCCTGCC CACCCTCCCT GCTGCCTGCC ACAGACAAGC 1621 CCTCGAAGCC ACAATGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1681 tatcaatttg ttgcaacgaa c