Construct: ORF ccsbBroadEn_03721
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014822.1_s300c1, BRDN0000394299
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CABP5 (56344)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56344 | CABP5 | calcium binding protein 5 | NM_019855.5 | 99.8% | 100% | 238C>T |
| 2 | human | 56344 | CABP5 | calcium binding protein 5 | XM_017026992.1 | 60.5% | 60.2% | (many diffs) |
| 3 | mouse | 29865 | Cabp5 | calcium binding protein 5 | NM_013877.3 | 88.4% | 93% | (many diffs) |
| 4 | mouse | 29865 | Cabp5 | calcium binding protein 5 | XM_017322297.1 | 79.4% | 80.9% | (many diffs) |
| 5 | mouse | 29865 | Cabp5 | calcium binding protein 5 | XM_017322298.1 | 79.4% | 80.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 588
- ORF length:
- 519
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAGTTCCCC ATGGGCCCCG CCTGCATCTT CTTGAGGAAA GGCATTGCTG 121 AGAAACAGCG GGAAAGACCA CTGGGACAAG ATGAGATTGA AGAGCTGCGG GAAGCATTTC 181 TTGAGTTCGA TAAGGACCGA GATGGGTTCA TCTCTTGTAA GGATCTGGGG AATCTCATGA 241 GGACGATGGG TTACATGCCC ACGGAGATGG AACTGATTGA GCTCGGCCAG CAAATCCGCA 301 TGAACTTGGG TGGCCGTGTA GACTTTGATG ACTTTGTGGA GCTGATGACC CCCAAATTGC 361 TTGCAGAAAC AGCTGGGATG ATCGGTGTCC AGGAGATGCG GGATGCCTTC AAGGAGTTTG 421 ACACGAATGG AGATGGGGAG ATCACCCTGG TGGAGCTACA GCAGGCCATG CAGAGACTCC 481 TGGGGGAGCG GCTCACCCCC CGGGAGATCT CTGAGGTTGT CCGGGAGGCT GATGTTAATG 541 GAGACGGCAC AGTTGACTTT GAAGAGTTTG TGAAGATGAT GTCTCGCTTG CCAACTTTCT 601 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac