Construct: ORF ccsbBroadEn_03726
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008343.1_s300c1, BRDN0000455690
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MMP26 (56547)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56547 | MMP26 | matrix metallopeptidase 26 | NM_021801.4 | 100% | 100% | |
| 2 | human | 56547 | MMP26 | matrix metallopeptidase 26 | XM_011520219.2 | 73.1% | 73.1% | 0_1ins210 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 852
- ORF length:
- 783
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAGCTCGTC ATCTTAAGAG TTACTATCTT CTTGCCCTGG TGTTTCGCCG 121 TTCCAGTGCC CCCTGCTGCA GACCATAAAG GATGGGACTT TGTTGAGGGC TATTTCCATC 181 AATTTTTCCT GACCAAGAAG GAGTCGCCAC TCCTTACCCA GGAGACACAA ACACAGCTCC 241 TGCAACAATT CCATCGGAAT GGGACAGACC TACTTGACAT GCAGATGCAT GCTCTGCTAC 301 ACCAGCCCCA CTGTGGGGTG CCTGATGGGT CCGACACCTC CATCTCGCCA GGAAGATGCA 361 AGTGGAATAA GCACACTCTA ACTTACAGGA TTATCAATTA CCCACATGAT ATGAAGCCAT 421 CCGCAGTGAA AGACAGTATA TATAATGCAG TTTCCATCTG GAGCAATGTG ACCCCTTTGA 481 TATTCCAGCA AGTGCAGAAT GGAGATGCAG ACATCAAGGT TTCTTTCTGG CAGTGGGCCC 541 ATGAAGATGG TTGGCCCTTT GATGGGCCAG GTGGTATCTT AGGCCATGCC TTTTTACCAA 601 ATTCTGGAAA TCCTGGAGTT GTCCATTTTG ACAAGAATGA ACACTGGTCA GCTTCAGACA 661 CTGGATATAA TCTGTTCCTG GTTGCAACTC ATGAGATTGG GCATTCTTTG GGCCTGCAGC 721 ACTCTGGGAA TCAGAGCTCC ATAATGTACC CCACTTACTG GTATCACGAC CCTAGAACCT 781 TCCAGCTCAG TGCCGATGAT ATCCAAAGGA TCCAGCATTT GTATGGAGAA AAATGTTCAT 841 CTGACATACC TTTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat 901 caatttgttg caacgaac