Construct: ORF ccsbBroadEn_03769
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014416.1_s300c1, BRDN0000389373
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTNNBIP1 (56998)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | NM_001012329.2 | 100% | 100% | |
| 2 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | NM_020248.3 | 100% | 100% | |
| 3 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | XM_017001853.2 | 100% | 100% | |
| 4 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | XM_017001854.2 | 100% | 100% | |
| 5 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | XM_017001855.2 | 100% | 100% | |
| 6 | mouse | 67087 | Ctnnbip1 | catenin beta interacting pr... | NM_001141930.1 | 93.8% | 97.5% | (many diffs) |
| 7 | mouse | 67087 | Ctnnbip1 | catenin beta interacting pr... | NM_023465.4 | 93.8% | 97.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 309
- ORF length:
- 243
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCGCGAGGGA GCTCCCGGGA AGAGTCCGGA GGAGATGTAC ATTCAGCAGA 121 AGGTCCGAGT GCTGCTCATG CTGCGGAAGA TGGGATCAAA CCTGACAGCC AGCGAGGAGG 181 AGTTCCTGCG CACCTATGCA GGGGTGGTCA ACAGCCAGCT CAGCCAGCTG CCTCCGCACT 241 CCATCGACCA GGGTGCAGAG GACGTGGTGA TGGCGTTTTC CAGGTCGGAG ACGGAAGACC 301 GGAGGCAGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 361 tttgttgcaa cgaac