Transcript: Human XM_017001853.2

PREDICTED: Homo sapiens catenin beta interacting protein 1 (CTNNBIP1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CTNNBIP1 (56998)
Length:
1387
CDS:
533..778

Additional Resources:

NCBI RefSeq record:
XM_017001853.2
NBCI Gene record:
CTNNBIP1 (56998)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001853.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000021830 AGTCCGGAGGAGATGTACATT pLKO.1 560 CDS 100% 5.625 7.875 N CTNNBIP1 n/a
2 TRCN0000275184 AGTCCGGAGGAGATGTACATT pLKO_005 560 CDS 100% 5.625 7.875 N CTNNBIP1 n/a
3 TRCN0000021832 GCCTCCGCACTCCATCGACCA pLKO.1 697 CDS 100% 0.000 0.000 N CTNNBIP1 n/a
4 TRCN0000285319 GACACCAGTGGTGCGTTTATA pLKO_005 950 3UTR 100% 15.000 10.500 N CTNNBIP1 n/a
5 TRCN0000021829 GCTGCGGAAGATGGGATCAAA pLKO.1 607 CDS 100% 5.625 3.938 N CTNNBIP1 n/a
6 TRCN0000275227 GCTGCGGAAGATGGGATCAAA pLKO_005 607 CDS 100% 5.625 3.938 N CTNNBIP1 n/a
7 TRCN0000285318 TAGCTGCAAAGCCCTTGGAAC pLKO_005 776 CDS 100% 4.050 2.835 N CTNNBIP1 n/a
8 TRCN0000021831 GAGGAGTTCCTGCGCACCTAT pLKO.1 644 CDS 100% 1.650 1.155 N CTNNBIP1 n/a
9 TRCN0000318982 GAGGAGTTCCTGCGCACCTAT pLKO_005 644 CDS 100% 1.650 1.155 N CTNNBIP1 n/a
10 TRCN0000095758 AGACGGAAGACCGGAGGCAGT pLKO.1 756 CDS 100% 0.000 0.000 N Ctnnbip1 n/a
11 TRCN0000354223 AGACGGAAGACCGGAGGCAGT pLKO_005 756 CDS 100% 0.000 0.000 N Ctnnbip1 n/a
12 TRCN0000095755 CCGGAGGAGATGTACATTCAA pLKO.1 563 CDS 100% 5.625 4.500 N Ctnnbip1 n/a
13 TRCN0000326878 CCGGAGGAGATGTACATTCAA pLKO_005 563 CDS 100% 5.625 4.500 N Ctnnbip1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001853.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03769 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03769 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473005 TCCCAGCTACCACTCCTAGCGACC pLX_317 100% 100% 100% V5 n/a
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