Construct: ORF ccsbBroadEn_03810
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000447.1_s300c1, BRDN0000394510
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SMAGP (57228)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57228 | SMAGP | small cell adhesion glycopr... | NM_001031628.2 | 100% | 100% | |
| 2 | human | 57228 | SMAGP | small cell adhesion glycopr... | NM_001033873.1 | 100% | 100% | |
| 3 | mouse | 207818 | Smagp | small cell adhesion glycopr... | NM_001033872.2 | 84.6% | 78.5% | (many diffs) |
| 4 | mouse | 207818 | Smagp | small cell adhesion glycopr... | NM_174992.4 | 84.6% | 78.5% | (many diffs) |
| 5 | mouse | 207818 | Smagp | small cell adhesion glycopr... | NM_001285413.1 | 74.4% | 69.3% | (many diffs) |
| 6 | mouse | 207818 | Smagp | small cell adhesion glycopr... | NM_001285414.1 | 74.4% | 69.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 360
- ORF length:
- 291
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCAGCCTC CTGACTACTC CTTCTCCAAG AGAAGAACTG ATGACCACCC 121 CAATTTTACA GCCCACTGAG GCCCTGTCCC CAGAAGATGG AGCCAGCACA GCACTCATTG 181 CAGTTGTTAT CACCGTTGTC TTCCTCACCC TGCTCTCGGT CGTGATCTTG ATCTTCTTTT 241 ACCTGTACAA GAACAAAGGC AGCTACGTCA CCTATGAACC TACAGAAGGT GAGCCCAGTG 301 CCATCGTCCA GATGGAGAGT GACTTGGCCA AGGGCAGCGA GAAAGAGGAA TATTTCATCT 361 TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 421 acgaac