Construct: ORF ccsbBroadEn_03811
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009839.1_s300c1, BRDN0000389821
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KAT14 (57325)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57325 | KAT14 | lysine acetyltransferase 14 | NM_020536.4 | 100% | 100% | |
| 2 | human | 57325 | KAT14 | lysine acetyltransferase 14 | NR_028402.2 | 66.2% | (many diffs) | |
| 3 | mouse | 228714 | Kat14 | lysine acetyltransferase 14 | NM_181417.3 | 87.3% | 95% | (many diffs) |
| 4 | mouse | 228714 | Kat14 | lysine acetyltransferase 14 | NM_001166640.1 | 72.6% | 79.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2412
- ORF length:
- 2346
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TAGTAGCATC CACCTGAGTA GTCTGATCAG TCGGCATGAT GACGAAGCCA 121 CGAGAACATC GACCTCAGAA GGACTGGAGG AAGGTGAAGT GGAGGGAGAG ACGCTCCTGA 181 TCGTCGAATC CGAGGATCAG GCATCAGTGG ACTTATCGCA CGACCAGAGT GGGGATTCCC 241 TCAACAGTGA TGAAGGAGAC GTGTCTTGGA TGGAGGAGCA GCTGTCCTAC TTCTGTGACA 301 AGTGCCAAAA ATGGATACCA GCCAGTCAGC TGAGGGAACA GCTCAGTTAC CTTAAGGGTG 361 ATAATTTTTT TAGGTTTACT TGTTCGGATT GCTCAGCAGA TGGCAAGGAG CAGTATGAAA 421 GGCTGAAGCT GACATGGCAG CAAGTCGTCA TGTTGGCAAT GTACAACTTG TCTCTGGAAG 481 GAAGTGGACG TCAAGGTTAT TTCAGGTGGA AAGAAGATAT CTGTGCTTTT ATTGAGAAAC 541 ATTGGACTTT TTTACTAGGG AATAGGAAAA AGACGTCTAC CTGGTGGAGC ACCGTGGCAG 601 GTTGCCTCAG CGTGGGAAGT CCCATGTACT TCCGTTCAGG TGCTCAGGAA TTTGGAGAGC 661 CAGGATGGTG GAAACTTGTT CATAACAAGC CCCCAACGAT GAAACCTGAA GGAGAGAAGT 721 TGTCTGCCTC TACTTTGAAA ATAAAAGCAG CCTCAAAACC AACTTTAGAT CCCATCATTA 781 CTGTTGAGGG ACTTAGAAAA CGAGCAAGTC GGAATCCTGT GGAATCTGCC ATGGAATTAA 841 AAGAGAAAAG GTCTCGAACT CAGGAAGCAA AAGACATTAG AAGAGCCCAG AAGGAGGCCG 901 CTGGCTTTCT TGACAGGAGC ACATCTTCTA CCCCTGTAAA ATTCATAAGC CGAGGCCGCA 961 GGCCAGATGT GATTCTGGAA AAAGGCGAAG TGATTGACTT TTCCTCCTTG AGCTCCTCTG 1021 ACCGCACCCC GCTGACAAGC CCATCTCCTT CTCCTTCTCT GGATTTCTCT GCCCCTGGTA 1081 CACCTGCCTC TCATTCTGCC ACACCTAGCT TGCTTTCAGA AGCAGATCTG ATTCCAGATG 1141 TGATGCCCCC ACAAGCCTTG TTTCATGATG ACGATGAGAT GGAAGGCGAT GGAGTCATAG 1201 ACCCAGGGAT GGAGTACGTC CCACCCCCTG CTGGGTCAGT AGCTTCTGGG CCAGTGGTTG 1261 GGGGCAGAAA GAAGGTCAGA GGCCCTGAAC AGATAAAGCA GGAGGTAGAG AGTGAGGAGG 1321 AAAAACCCGA CAGGATGGAT ATTGACAGTG AAGACACAGA TTCAAACACA TCTTTGCAAA 1381 CAAGGGCTAG AGAAAAGAGG AAGCCTCAGC TGGAGAAGGA CACAAAGCCG AAAGAGCCCA 1441 GGTATACTCC CGTGAGCATC TACGAGGAAA AGCTGCTGCT CAAGAGGCTG GAAGCTTGTC 1501 CCGGTGCTGT TGCCATGACT CCGGAAGCTC GGAGACTGAA ACGCAAACTG ATTGTCAGAC 1561 AAGCGAAAAG GGATAGGGGA TTACCACTTT TTGACTTGGA TCAAGTTGTT AATGCTGCTC 1621 TTTTGTTAGT TGACGGGATT TATGGAGCCA AAGAAGGAGG AATTTCCAGA CTTCCAGCTG 1681 GACAAGCCAC GTACAGAACC ACCTGTCAGG ACTTCAGAAT CCTTGACCGA TACCAGACTT 1741 CCTTGCCGTC CAGGAAGGGA TTTCGACACC AGACCACCAA GTTTTTGTAT CGCTTGGTAG 1801 GATCAGAAGA TATGGCTGTG GACCAGAGTA TTGTCAGCCC TTATACCTCT CGGATCTTGA 1861 AACCTTATAT CAGGCGTGAT TATGAAACAA AGCCACCCAA ACTGCAGCTC CTGTCACAGA 1921 TTCGTTCCCA CCTGCACAGG AGCGACCCTC ACTGGACGCC GGAGCCCGAC GCACCTCTCG 1981 ATTACTGTTA TGTGCGGCCA AATCACATCC CAACGATCAA CTCCATGTGT CAGGAGTTTT 2041 TTTGGCCTGG CATTGACCTG TCTGAGTGTC TGCAGTACCC AGACTTCAGT GTTGTTGTTC 2101 TTTATAAAAA AGTCATCATT GCCTTTGGCT TCATGGTTCC TGATGTGAAA TACAATGAAG 2161 CTTACATTTC ATTTCTGTTC GTCCACCCTG AATGGAGAAG AGCAGGGATT GCAACTTTCA 2221 TGATCTATCA TCTGATTCAG ACCTGCATGG GCAAGGACGT AACCCTTCAC GTCTCAGCAA 2281 GCAACCCCGC TATGCTACTG TACCAGAAGT TTGGATTCAA GACTGAAGAA TATGTATTAG 2341 ATTTCTATGA TAAATATTAC CCATTGGAGA GTACAGAGTG TAAACACGCA TTCTTTCTGA 2401 GGCTCCGGCG CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2461 caatttgttg caacgaac