Construct: ORF ccsbBroadEn_03842
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004612.1_s300c1, BRDN0000394177
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF317 (57693)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57693 | ZNF317 | zinc finger protein 317 | NM_020933.5 | 100% | 100% | |
| 2 | human | 57693 | ZNF317 | zinc finger protein 317 | XM_024451626.1 | 100% | 100% | |
| 3 | human | 57693 | ZNF317 | zinc finger protein 317 | NM_001190791.2 | 94.6% | 94.6% | 288_289ins96 |
| 4 | human | 57693 | ZNF317 | zinc finger protein 317 | XR_430146.4 | 44.9% | 1_290del;2076_3970del | |
| 5 | human | 57693 | ZNF317 | zinc finger protein 317 | NR_102435.2 | 42.4% | 1_288del;577_722del;2220_4202del | |
| 6 | mouse | 244713 | Zfp317 | zinc finger protein 317 | XM_017313370.1 | 51.6% | 57.7% | (many diffs) |
| 7 | mouse | 244713 | Zfp317 | zinc finger protein 317 | XM_017313371.1 | 51.6% | 57.7% | (many diffs) |
| 8 | mouse | 244713 | Zfp317 | zinc finger protein 317 | XM_017313372.1 | 51.6% | 57.7% | (many diffs) |
| 9 | mouse | 244713 | Zfp317 | zinc finger protein 317 | XM_017313373.1 | 51.6% | 57.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1851
- ORF length:
- 1785
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGCTCTGTCC CCCACATTTG CCACGTCCAC CCAGGATTCC ACCTGTCTCC 121 AGGACTCAGA ATTTCCTGTT TCTTCAAAAG ACCATTCCTG TCCCCAGAAT TTGGACCTGT 181 TCGTGTGCAG TGGTCTGGAG CCTCACACAC CCAGTGTTGG TTCCCAGGAA TCGGTGACTT 241 TCCAAGATGT CGCTGTGGAC TTTACCGAGA AGGAGTGGCC CTTGCTGGAT TCTTCTCAGA 301 GAAAACTGTA CAAAGATGTA ATGCTGGAGA ACTACAGCAA CCTCACTTCA CTGGGGTATC 361 AGGTCGGCAA ACCCAGCCTC ATCTCACACT TGGAGCAGGA GGAGGAGCCG AGGACAGAGG 421 AGAGGGGCGC TCACCAGGGC GCTTGTGCAG ATTGGGAGAC TCCATCTAAA ACCAAGTGGT 481 CACTTCTTAT GGAAGATATT TTTGGGAAGG AAACGCCCAG TGGTGTGACG ATGGAAAGAG 541 CCGGTCTTGG AGAGAAGTCC ACTGAATACG CTCACTTGTT CGAAGTCTTT GGCATGGACC 601 CTCATCTCAC TCAGCCAATG GGAAGGCACG CTGGCAAGAG GCCCTATCAC CGCCGCGACT 661 ATGGGGTAGC GTTCAAGGGC AGGCCGCACC TCACTCAGCA CATGAGCATG TACGACGGGA 721 GAAAAATGCA TGAATGTCAT CAGTGCCAAA AAGCCTTCAC CACGAGCGCG TCCCTCACAC 781 GGCACAGGAG AATCCACACC GGGGAGAAGC CTTACGAGTG CAGCGACTGC GGGAAAGCCT 841 TCAACGACCC TTCAGCCCTT AGGAGCCACG CAAGAACTCA CCTCAAAGAG AAGCCCTTTG 901 ACTGCAGTCA GTGTGGAAAT GCATTCCGGA CCCTCTCGGC CCTGAAAATC CACATGCGAG 961 TTCACACTGG CGAGAGGCCT TACAAGTGTG ATCAGTGCGG GAAGGCTTAC GGCCGGAGCT 1021 GCCACCTCAT CGCACACAAG AGAACGCACA CCGGAGAGAG GCCCTACGAG TGTCACGACT 1081 GTGGGAAAGC TTTCCAGCAC CCCTCCCACC TCAAAGAGCA CGTGAGGAAT CACACGGGGG 1141 AGAAGCCCTA CGCGTGCACG CAGTGCGGCA AAGCCTTCCG CTGGAAGTCC AACTTTAATT 1201 TGCACAAGAA GAACCACATG GTGGAGAAGA CCTACGAATG TAAAGAATGC GGGAAATCCT 1261 TTGGCGATCT CGTGTCCCGG AGGAAACACA TGAGGATTCA CATCGTCAAG AAACCCGTGG 1321 AATGTCGGCA GTGCGGGAAG ACCTTCCGAA ACCAGTCCAT CCTTAAGACT CACATGAACT 1381 CTCACACTGG AGAGAAACCA TACGGGTGCG ATCTCTGCGG GAAAGCTTTC AGCGCGAGTT 1441 CAAACCTCAC CGCACACAGG AAGATACACA CGCAAGAGAG ACGCTACGAA TGCGCCGCCT 1501 GCGGGAAAGT CTTCGGTGAC TATTTATCCC GGCGGAGGCA CATGAGCGTT CACCTTGTAA 1561 AGAAACGAGT TGAGTGTAGG CAGTGTGGCA AGGCCTTCAG GAACCAGTCA ACGCTGAAGA 1621 CGCACATGCG AAGCCACACG GGGGAGAAAC CGTACGAATG CGATCACTGT GGGAAGGCCT 1681 TCAGCATAGG CTCCAACCTG AATGTGCACA GGCGGATCCA CACCGGGGAG AAGCCCTACG 1741 AATGCCTTGT CTGCGGGAAA GCCTTCAGCG ACCACTCATC CCTCAGGAGC CACGTGAAAA 1801 CTCACCGGGG AGAGAAGCTC TTTGTGTCAT CCGTGTGGAA AAGGCTCCAG TGCCCAACTT 1861 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac