Construct: ORF ccsbBroadEn_03851
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010608.1_s300c1, BRDN0000395733
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BRINP2 (57795)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57795 | BRINP2 | BMP/retinoic acid inducible... | NM_021165.4 | 100% | 100% | |
| 2 | human | 57795 | BRINP2 | BMP/retinoic acid inducible... | XM_005245379.2 | 100% | 100% | |
| 3 | human | 57795 | BRINP2 | BMP/retinoic acid inducible... | XM_024448722.1 | 100% | 100% | |
| 4 | human | 57795 | BRINP2 | BMP/retinoic acid inducible... | XM_011509826.1 | 59.7% | 59.7% | 0_1ins945 |
| 5 | mouse | 240843 | Brinp2 | bone morphogenic protein/re... | NM_207583.2 | 90% | 94.7% | (many diffs) |
| 6 | mouse | 240843 | Brinp2 | bone morphogenic protein/re... | XM_006496836.1 | 90% | 94.7% | (many diffs) |
| 7 | mouse | 240843 | Brinp2 | bone morphogenic protein/re... | XM_006496837.1 | 90% | 94.7% | (many diffs) |
| 8 | mouse | 240843 | Brinp2 | bone morphogenic protein/re... | XM_011238810.1 | 54.6% | 57.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2415
- ORF length:
- 2349
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GTGGCAGTGT GGCACTCGGT TTAGAGGGCT TCGGCCGGCG GTGGCCCCAT 121 GGACAGCCCT GCTGGCACTG GGCCTGCCTG GCTGGGTGTT GGCTGTCTCA GCCACGGCGG 181 CTGCTGTGGT CCCCGAGCAG CATGCCTCCG TAGCTGGCCA GCATCCCCTG GACTGGCTGC 241 TCACAGACCG GGGCCCCTTC CACCGCGCTC AGGAGTATGC TGACTTCATG GAGCGGTACC 301 GCCAGGGTTT CACCACCAGG TACAGGATTT ATAGGGAGTT TGCCCGTTGG AAGGTGAACA 361 ACTTGGCTCT GGAAAGGAAG GACTTCTTCA GTTTGCCATT GCCTCTTGCC CCAGAGTTTA 421 TCCGGAACAT TCGCCTCCTT GGAAGGAGAC CCAATCTGCA ACAGGTTACA GAAAATCTGA 481 TTAAAAAGTA CGGCACTCAT TTCTTACTTT CTGCCACCCT TGGAGGAGAA GAGTCCCTGA 541 CCATTTTTGT GGACAAGCAG AAACTGGGAA GAAAGACAGA GACAACAGGA GGTGCCTCTA 601 TAATCGGGGG CAGTGGGAAC AGCACAGCTG TGTCCCTGGA GACCCTGCAC CAGCTGGCCG 661 CCTCCTACTT CATCGACAGA GAGAGCACGC TGCGACGGCT GCACCATATC CAGATAGCCA 721 CGGGGGCCAT CAAGGTCACC GAGACCAGGA CCGGTCCTCT GGGCTGCAGC AACTATGACA 781 ATCTGGACTC AGTCAGTTCT GTCTTGGTAC AGAGTCCAGA GAACAAAGTA CAGTTACTTG 841 GCCTTCAGGT GCTGCTGCCT GAGTATCTGC GTGAGCGCTT TGTAGCTGCA GCACTCAGCT 901 ACATCACATG CAGCTCTGAG GGTGAGCTCG TCTGCAAGGA GAATGACTGC TGGTGCAAGT 961 GCAGCCCCAC CTTCCCTGAA TGCAACTGCC CTGATGCTGA CATCCAGGCC ATGGAGGACA 1021 GCCTGCTGCA GATCCAGGAC TCCTGGGCCA CTCACAACCG GCAGTTTGAA GAGTCAGAAG 1081 AGTTCCAGGC CCTGCTGAAA AGGCTGCCCG ATGACCGGTT CCTGAACTCC ACAGCTATCT 1141 CCCAGTTCTG GGCCATGGAC ACCAGCCTTC AGCACCGCTA CCAGCAGCTG GGAGCTGGCT 1201 TGAAAGTGCT GTTCAAAAAG ACCCATCGGA TCCTACGCCG GCTCTTCAAC CTCTGCAAGC 1261 GCTGCCATCG CCAGCCTCGC TTCCGCCTGC CCAAGGAGAG GTCCTTGTCC TACTGGTGGA 1321 ACCGAATCCA GTCCCTCCTC TACTGTGGGG AAAGCACCTT TCCTGGCACT TTCCTGGAAC 1381 AGAGCCACAG CTGCACCTGC CCCTATGACC AATCTTCCTG CCAGGGCCCC ATCCCATGTG 1441 CCTTGGGCGA AGGGCCCGCG TGTGCCCACT GTGCTCCAGA CAATAGCACA CGCTGTGGGA 1501 GCTGCAACCC GGGCTATGTG CTGGCCCAGG GGCTGTGCCG GCCAGAGGTG GCCGAGTCCC 1561 TGGAAAACTT TCTTGGGCTG GAGACAGACT TGCAGGACCT GGAGCTAAAG TACCTGCTGC 1621 AGAAGCAGGA TAGCCGCATT GAGGTACACT CCATCTTCAT CAGCAATGAC ATGCGGCTGG 1681 GCAGCTGGTT TGACCCTTCC TGGAGGAAGC GCATGCTGCT CACCCTGAAG AGCAACAAGT 1741 ACAAGCCTGG GCTGGTGCAC GTGATGTTGG CCTTGTCCTT GCAGATCTGT CTCACCAAGA 1801 ACAGCACCCT GGAGCCTGTC ATGGCCATCT ACGTCAACCC CTTTGGGGGC AGCCACTCTG 1861 AGAGCTGGTT CATGCCTGTG AATGAGGGCA GCTTTCCTGA CTGGGAAAGG ACTAACGTGG 1921 ATGCAGCTGC CCAGTGCCAA AACTGGACTA TCACCTTGGG GAATAGGTGG AAGACTTTCT 1981 TTGAGACAGT TCATGTTTAC CTACGGAGCC GAATCAAGTC CCTGGATGAC AGCTCCAATG 2041 AGACAATCTA CTATGAGCCC CTGGAGATGA CTGATCCCTC TAAGAATTTG GGTTACATGA 2101 AAATTAACAC CTTGCAGGTC TTTGGCTACA GCCTGCCCTT TGACCCAGAT GCTATCCGGG 2161 ACTTAATTCT CCAGTTGGAC TACCCATATA CTCAAGGTTC CCAGGACTCT GCACTCTTGC 2221 AGCTCATTGA GCTCAGGGAC CGGGTGAACC AGCTTTCTCC ACCTGGCAAA GTCCGACTTG 2281 ACCTTTTCTC CTGCTTGCTC CGGCATCGGC TTAAGCTGGC CAACAATGAG GTGGGCAGGA 2341 TCCAGTCCTC CCTGAGGGCT TTCAATTCTA AGCTGCCAAA CCCTGTGGAA TATGAGACCG 2401 GCAAACTCTG TAGCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2461 tatcaatttg ttgcaacgaa c