Construct: ORF ccsbBroadEn_03915

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014182.1_s300c1, BRDN0000391284
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBM26 (64062)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64062 RBM26 RNA binding motif protein 26 NM_022118.5 100% 100%
2 human 64062 RBM26 RNA binding motif protein 26 XM_011535193.3 100% 100%
3 human 64062 RBM26 RNA binding motif protein 26 NM_001286632.1 99.6% 99.6% 1853_1861delAGGTAATGC
4 human 64062 RBM26 RNA binding motif protein 26 XM_011535192.3 99.6% 99.6% 1853_1861delAGGTAATGC
5 human 64062 RBM26 RNA binding motif protein 26 XM_017020699.2 99.1% 99.1% 1274_1288del;1868_1876delAGGTAATGC
6 human 64062 RBM26 RNA binding motif protein 26 XM_017020694.2 98.6% 98.6% 1132_1161del;1883_1891delAGGTAATGC
7 human 64062 RBM26 RNA binding motif protein 26 XM_011535191.3 98.4% 98.4% 1132_1161del;1304_1318del
8 human 64062 RBM26 RNA binding motif protein 26 XM_017020693.2 98.1% 98.1% 1132_1161del;1304_1318del;1898_1906delAGGTAATGC
9 human 64062 RBM26 RNA binding motif protein 26 XM_017020692.2 97.6% 97.6% 1976_2047del
10 human 64062 RBM26 RNA binding motif protein 26 XM_017020700.2 97.5% 96.3% (many diffs)
11 human 64062 RBM26 RNA binding motif protein 26 NM_001366735.2 97.3% 97.3% 1853_1861delAGGTAATGC;1985_2056del
12 human 64062 RBM26 RNA binding motif protein 26 XM_011535188.3 97.3% 97.3% 1853_1861delAGGTAATGC;1985_2056del
13 human 64062 RBM26 RNA binding motif protein 26 XM_017020698.2 97.2% 96% (many diffs)
14 human 64062 RBM26 RNA binding motif protein 26 NM_001286631.1 97.1% 97.1% 1274_1288del;1991_2062del
15 human 64062 RBM26 RNA binding motif protein 26 XM_011535187.3 97.1% 97.1% 1274_1288del;1991_2062del
16 human 64062 RBM26 RNA binding motif protein 26 XM_011535185.3 96.8% 96.8% 1274_1288del;1868_1876delAGGTAATGC;2000_2071del
17 human 64062 RBM26 RNA binding motif protein 26 XM_017020691.2 96.6% 96.6% 1132_1161del;2006_2077del
18 human 64062 RBM26 RNA binding motif protein 26 XM_017020695.2 96.6% 95.4% (many diffs)
19 human 64062 RBM26 RNA binding motif protein 26 XM_017020690.2 96.3% 96.3% 1132_1161del;1883_1891delAGGTAATGC;2015_2086del
20 human 64062 RBM26 RNA binding motif protein 26 XM_017020696.2 96.3% 95.1% (many diffs)
21 human 64062 RBM26 RNA binding motif protein 26 XM_011535183.3 96.1% 96.1% 1132_1161del;1304_1318del;2021_2092del
22 human 64062 RBM26 RNA binding motif protein 26 XM_011535190.2 96.1% 94.9% (many diffs)
23 human 64062 RBM26 RNA binding motif protein 26 XM_005266491.5 95.8% 95.8% (many diffs)
24 human 64062 RBM26 RNA binding motif protein 26 XM_011535180.3 95.8% 95.8% (many diffs)
25 human 64062 RBM26 RNA binding motif protein 26 XM_017020688.2 95.8% 95.8% (many diffs)
26 human 64062 RBM26 RNA binding motif protein 26 XM_024449393.1 95.8% 95.8% (many diffs)
27 human 64062 RBM26 RNA binding motif protein 26 XM_011535189.2 95.8% 94.6% (many diffs)
28 human 64062 RBM26 RNA binding motif protein 26 XM_011535186.3 94.9% 93.8% (many diffs)
29 human 64062 RBM26 RNA binding motif protein 26 XM_011535184.2 94.5% 93.3% (many diffs)
30 human 64062 RBM26 RNA binding motif protein 26 XM_017020689.2 94.3% 93.1% (many diffs)
31 human 64062 RBM26 RNA binding motif protein 26 XM_011535182.2 94% 92.9% (many diffs)
32 human 64062 RBM26 RNA binding motif protein 26 XM_017020697.2 93.9% 93.6% (many diffs)
33 human 64062 RBM26 RNA binding motif protein 26 XM_011535181.2 93.8% 92.7% (many diffs)
34 human 64062 RBM26 RNA binding motif protein 26 XM_011535179.2 93.6% 92.4% (many diffs)
35 human 64062 RBM26 RNA binding motif protein 26 XM_005266497.2 93.5% 93.2% (many diffs)
36 human 64062 RBM26 RNA binding motif protein 26 XM_006719857.2 93.5% 93.1% (many diffs)
37 human 64062 RBM26 RNA binding motif protein 26 XM_017020703.2 88.1% 87.4% (many diffs)
38 human 64062 RBM26 RNA binding motif protein 26 XM_017020701.2 87.3% 86.5% (many diffs)
39 human 64062 RBM26 RNA binding motif protein 26 XM_017020702.2 87.3% 86.5% (many diffs)
40 human 64062 RBM26 RNA binding motif protein 26 XM_011535195.1 65.7% 64.6% (many diffs)
41 mouse 74213 Rbm26 RNA binding motif protein 26 NM_134077.4 91.3% 96.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3009
ORF length:
2940
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTTTCTAAA ATGATCATTG AAAACTTCGA GGCACTCAAG TCCTGGCTCA
121GCAAGACTCT CGAGCCCATC TGTGATGCAG ATCCATCCGC CCTAGCAAAA TATGTTCTGG
181CTTTGGTAAA GAAAGACAAA AGTGAAAAAG AGTTAAAGGC ATTATGTATT GATCAGCTGG
241ATGTATTTCT TCAGAAAGAG ACACAGATAT TTGTGGAAAA ACTTTTTGAT GCTGTGAATA
301CAAAGAGTTA CCTACCTCCT CCAGAGCAGC CATCATCAGG AAGCCTGAAG GTAGAATTTT
361TTCCACACCA AGAAAAAGAT ATAAAGAAGG AAGAGATCAC TAAGGAGGAA GAGCGAGAGA
421AGAAGTTTTC TAGAAGGCTA AATCACAGTC CTCCCCAGTC AAGCTCCCGA TACAGGGAAA
481ATAGAAGCCG TGATGAGAGG AAAAAAGATG ATCGTTCTCG CAAAAGAGAT TATGATCGAA
541ACCCTCCTCG AAGAGATTCA TACAGAGACC GGTACAATAG AAGACGAGGG CGGAGTCGCA
601GTTATAGCAG GAGTCGAAGT CGAAGTTGGA GTAAAGAGAG GCTTCGTGAG AGGGACAGAG
661ATAGAAGCAG GACTAGAAGC AGAAGCAGAA CACGAAGCAG GGAAAGGGAT CTGGTAAAAC
721CTAAATATGA CCTGGATAGA ACAGATCCAT TAGAAAATAA TTATACTCCA GTCTCTTCGG
781TACCTAGTAT TTCATCTGGC CACTACCCTG TACCTACTTT GAGCAGCACT ATTACAGTAA
841TTGCTCCTAC TCATCATGGA AACAACACTA CCGAAAGTTG GTCTGAATTT CATGAAGACC
901AAGTGGACCA TAACTCTTAC GTAAGACCAC CCATGCCAAA GAAACGGTGT AGAGACTATG
961ATGAAAAGGG TTTTTGTATG AGAGGAGACA TGTGTCCTTT TGATCATGGA AGTGATCCAG
1021TAGTTGTAGA AGATGTGAAT CTTCCTGGTA TGCTGCCTTT CCCAGCACAG CCTCCTGTTG
1081TTGAAGGACC ACCTCCTCCT GGACTCCCCC CACCTCCACC AATTCTTACA CCCCCACCTG
1141TGAATCTCAG GCCCCCAGTA CCACCGCCAG GTCCATTGCC ACCCAGTCTC CCACCTGTTA
1201CAGGACCACC ACCTCCACTT CCTCCTTTGC AGCCATCTGG CATGGATGCT CCTCCAAACT
1261CTGCAACCAG TTCTGTTCCT ACTGTAGTAA CAACTGGCAT TCATCACCAG CCTCCTCCTG
1321CTCCACCCTC TCTTTTTACT GCAGATACAT ATGACACAGA TGGCTACAAT CCTGAAGCCC
1381CAAGCATAAC AAACACTTCC AGACCTATGT ATAGACACAG AGTGCATGCA CAAAGGCCCA
1441ACTTGATAGG ACTAACATCA GGGGATATGG ATTTGCCACC CAGAGAAAAG CCTCCCAATA
1501AAAGCAGTAT GAGGATAGTA GTGGACTCAG AATCAAGGAA AAGAACCATT GGTTCTGGAG
1561AGCCTGGAGT TCCTACAAAG AAGACTTGGT TTGATAAACC AAATTTTAAT AGAACAAACA
1621GCCCAGGCTT TCAGAAGAAG GTTCAATTTG GAAATGAAAA TACCAAGCTT GAACTTAGAA
1681AAGTTCCTCC AGAATTAAAT AATATCAGCA AACTTAATGA ACATTTTAGT CGATTTGGAA
1741CCTTGGTTAA CTTACAGGTT GCTTATAATG GTGATCCTGA AGGTGCCCTA ATCCAATTTG
1801CAACATACGA AGAAGCAAAG AAAGCAATAT CAAGTACGGA AGCAGTATTA AACAATCGCT
1861TTATTAAGGT TTATTGGCAC AGAGAAGGAA GCACCCAACA GTTACAAACT ACTTCTCCAA
1921AGCCTTTAGT CCAGCAGCCC ATTTTGCCTG TTGTGAAGCA GTCAGTCAAA GAGCGGCTGG
1981GTCCAGTACC TTCAAGTACT ATTGAACCTG CAGAAGCCCA GAGTGCCTCT TCAGACCTTC
2041CTCAGGTGTT GTCTACATCT ACTGGCCTAA CAAAAACAGT GTATAATCCA GCTGCTTTGA
2101AGGCTGCACA GAAAACCTTA CTTGTTTCCA CCTCTGCAGT TGATAATAAT GAAGCACAGA
2161AAAAAAAACA GGAGGCATTG AAACTTCAGC AGGATGTAAG GAAAAGGAAA CAAGAAATTT
2221TAGAAAAGCA CATTGAAACA CAGAAGATGT TAATTTCAAA ACTGGAGAAA AACAAAACAA
2281TGAAGTCTGA AGATAAAGCA GAAATAATGA AAACTTTAGA GGTTTTGACA AAAAATATTA
2341CCAAGTTGAA AGATGAGGTC AAAGCTGCTT CTCCTGGACG CTGTCTTCCA AAAAGTATAA
2401AAACCAAGAC TCAGATGCAG AAGGAATTAC TTGACACAGA ACTGGATTTA TATAAGAAGA
2461TGCAGGCTGG AGAAGAAGTC ACTGAACTTA GGAGAAAGTA TACAGAATTA CAGCTGGAAG
2521CTGCCAAACG AGGGATTCTT TCATCTGGTC GGGGCAGAGG AATTCATTCA AGAGGTCGAG
2581GTGCAGTTCA TGGCCGAGGC AGGGGGCGAG GGCGAGGGCG AGGTGTGCCT GGTCATGCTG
2641TGGTGGATCA CCGTCCCAGG GCATTGGAGA TTTCTGCATT TACGGAGAGC GATAGAGAAG
2701ATCTTCTTCC TCATTTTGCG CAATATGGTG AAATTGAAGA TTGTCAGATT GATGATTCCT
2761CACTTCATGC AGTAATTACA TTCAAGACAA GAGCAGAAGC TGAAGCAGCT GCAGTTCATG
2821GAGCTCGTTT CAAAGGGCAA GATCTAAAAC TGGCATGGAA TAAACCAGTA ACTAATATTT
2881CAGCTGTTGA AACAGAAGAA GTTGAGCCTG ATGAAGAAGA ATTTCAGGAA GAGTCTTTGG
2941TGGATGACTC ATTACTTCAA GATGATGATG AAGAAGAAGA GGACAATGAA TCTCGTTCTT
3001GGAGAAGATT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
3061tttgttgcaa cgaac

Download FASTA (ORF) (Full)